Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SGGB_RS04245 Genome accession   NC_017576
Coordinates   835215..837422 (+) Length   735 a.a.
NCBI ID   WP_014619999.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 830215..842422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS04220 (SGGB_0793) miaA 830554..831441 (+) 888 WP_012961772.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  SGGB_RS04225 (SGGB_0794) hflX 831580..832818 (+) 1239 WP_014619997.1 GTPase HflX -
  SGGB_RS04230 (SGGB_0795) - 832811..833449 (+) 639 WP_014619998.1 cystathionine beta-lyase -
  SGGB_RS04235 (SGGB_0796) rnz 833489..834418 (+) 930 WP_009853926.1 ribonuclease Z -
  SGGB_RS04240 (SGGB_0797) - 834415..835173 (+) 759 WP_012961775.1 SDR family NAD(P)-dependent oxidoreductase -
  SGGB_RS04245 (SGGB_0798) recJ 835215..837422 (+) 2208 WP_014619999.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SGGB_RS04250 (SGGB_0799) - 837597..838865 (+) 1269 WP_014620000.1 DUF5105 domain-containing protein -
  SGGB_RS04255 (SGGB_0800) - 839063..839326 (+) 264 WP_012961777.1 hypothetical protein -
  SGGB_RS04260 (SGGB_0801) - 839418..840767 (-) 1350 WP_014620001.1 hypothetical protein -
  SGGB_RS04265 (SGGB_0802) - 840862..841644 (-) 783 WP_013642946.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 82259.73 Da        Isoelectric Point: 4.3624

>NTDB_id=39548 SGGB_RS04245 WP_014619999.1 835215..837422(+) (recJ) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MITSKYNWKNIEKEPDNGFFELTKKEKLTELASQILYSRGVDTAEKLTQFLSTDLSQLHDPYLLHDMDKAVERIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFTDGYGPNGSVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQ
SQGVDVIVTDHHGLPAELPEAFAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKQTERIGLIELMKVSDVDMADVNEETVGFKIAPQLNALGRLDDPNPAVELLTGFDDEEAHNIAKMINAKN
EERKEIVQEIFDEAMSMVDLEKPVQVLAKEGWHPGVLGIVAGRILEQIAQPVIVLNIEDGLAKGSARSIEAINIFHALDE
HRGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDLDTVHSLEKLAPFGMDNPKP
VFEIKDFVVKQARTMGQNGAHLKLKIAQGTTAIDLVAFNQGHLAQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDARVE
GVQLIDIRSKTASLPERVPVLAEDSTANEVVVLDIPDKAEELKSLFVGRHFEAVYFKNHIKRAYYLTGYGTRDQFAKLYK
TIYQFSEFDVRYKLKDLSQYLNIPDILLVKMIQIFDELDFVTITDGVMVVNKDAQKRSISESQIYQDLKQQVKFQELMAL
GTPQEIYDWLTDEDD

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=39548 SGGB_RS04245 WP_014619999.1 835215..837422(+) (recJ) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATAATGGCTTTTTTGAGCTGACAAAAAAAGAAAA
ACTAACAGAATTAGCTAGTCAGATTCTTTATAGCCGAGGTGTTGATACGGCAGAAAAATTGACTCAATTTTTATCAACGG
ATTTGTCACAATTGCATGACCCTTACCTTTTACATGACATGGATAAAGCGGTTGAGCGTATTCGCCAAGCCATTGAGAAC
TACGAGCAAATTTTGGTTTATGGTGATTATGATGCTGACGGAATGACTAGTGCCAGTATTATGAAAGAAGCCCTTGAAAT
GTTAGGCGCTGAAGCTCAAGTTTATCTGCCAAATCGTTTCACAGATGGTTATGGTCCCAATGGGTCGGTCTATAAATATT
TCATTGAGCAGCAAAACGTTTCTTTGATTATCACGGTGGACAATGGCGTAGCAGGGCACGAAGCGATTGCCTACGCACAA
AGTCAGGGGGTAGATGTCATTGTGACAGACCACCACGGTTTGCCAGCAGAGCTACCAGAAGCATTTGCGATTGTGCACCC
AGAACACCCAGAAGCTGATTATCCGTTCAAATATCTGGCTGGCTGTGGCGTTGCTTTCAAAGTTGCTTGTGCTTTGCTAG
AATCTATTCCGACAGAAATGCTTGATCTGGTGGCAATTGGAACAATTGCTGATATGGTGAGTTTGACTGATGAAAACCGT
ATTATGGTTAAAGTCGGACTTGAAATTCTGAAACAAACCGAACGCATTGGTCTGATTGAATTGATGAAAGTCTCAGACGT
GGATATGGCAGATGTCAATGAAGAAACGGTTGGTTTCAAAATTGCTCCGCAGCTAAATGCACTTGGTCGCCTAGATGACC
CAAATCCTGCTGTCGAATTATTGACTGGCTTTGATGACGAAGAAGCGCATAACATTGCCAAGATGATTAATGCTAAAAAC
GAAGAACGCAAGGAAATTGTTCAGGAAATCTTCGATGAAGCCATGAGCATGGTTGATTTGGAAAAGCCAGTGCAAGTATT
GGCTAAAGAAGGTTGGCACCCAGGCGTTTTAGGAATTGTCGCAGGGCGTATTTTAGAACAAATCGCGCAGCCAGTGATTG
TTTTAAATATCGAAGATGGGCTTGCTAAAGGTTCAGCCAGAAGTATTGAGGCCATTAATATTTTCCATGCTCTTGATGAG
CACCGTGGCTTATTTGAAGCCTTTGGTGGACACGCTGGCGCTGCTGGAATGACTTTGGTGACTGAAAATCTTGATAAATT
ATCACAAGTTTTGTGTGATTATATTGCTGAAAATGATATTGACTTATCACAGAAAAAAGAGCTTGTTATTGATGAGGTTC
TGGAGCTATCAGAGATTGACCTTGATACCGTGCACAGTCTTGAAAAATTGGCACCATTTGGCATGGACAATCCAAAACCA
GTCTTTGAAATTAAAGATTTTGTGGTGAAACAAGCACGCACCATGGGACAAAATGGAGCGCATTTAAAATTAAAAATTGC
CCAAGGCACAACGGCAATTGACCTTGTTGCCTTTAATCAAGGACATCTGGCGCAGGAATTTCAACAAGCGCAAAATCTTT
GCCTTGCAACGACCTTATCGATTAATAAGTGGAATGGGCAAACGACTGTTCAATTAATGTTGGAAGATGCGCGTGTTGAG
GGTGTTCAGTTGATTGATATTCGCTCCAAAACGGCTAGCCTTCCAGAACGTGTTCCAGTATTGGCTGAAGATAGCACGGC
AAATGAAGTTGTGGTGTTAGACATTCCTGATAAGGCTGAAGAATTGAAATCACTCTTTGTCGGTCGTCATTTTGAAGCCG
TTTATTTTAAAAATCATATTAAACGTGCTTATTATCTGACAGGCTATGGCACACGTGACCAATTTGCTAAGCTTTATAAA
ACTATTTATCAATTCTCAGAATTTGATGTCCGCTACAAGTTGAAAGATTTGAGTCAATACCTTAATATCCCTGATATTTT
ACTCGTTAAAATGATTCAGATTTTTGATGAATTAGATTTTGTAACCATCACAGATGGTGTTATGGTCGTCAACAAAGATG
CCCAGAAACGCAGTATTTCAGAAAGCCAAATCTACCAAGACCTCAAACAACAAGTTAAATTCCAAGAGCTAATGGCGCTC
GGAACCCCACAAGAAATTTACGATTGGCTAACTGATGAAGATGACTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)

DHHA1 domain (DHHA1)

(317-433)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.568

100

0.68
  recJ Bacillus subtilis subsp. subtilis str. 168

38.144

100

0.403

Multiple sequence alignment