Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   GFB63_RS01340 Genome accession   NZ_CP045596
Coordinates   278962..280932 (-) Length   656 a.a.
NCBI ID   WP_193838345.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 273962..285932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS01320 (GFB63_01375) amiF 274460..275389 (-) 930 WP_193838344.1 ATP-binding cassette domain-containing protein Regulator
  GFB63_RS01325 (GFB63_01380) amiE 275382..276467 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  GFB63_RS01330 (GFB63_01385) amiD 276477..277403 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  GFB63_RS01335 (GFB63_01390) amiC 277403..278896 (-) 1494 WP_024010009.1 ABC transporter permease Regulator
  GFB63_RS01340 (GFB63_01395) amiA3 278962..280932 (-) 1971 WP_193838345.1 peptide ABC transporter substrate-binding protein Regulator
  GFB63_RS01345 (GFB63_01400) - 281169..281359 (-) 191 Protein_279 IS3 family transposase -
  GFB63_RS10405 - 281353..281763 (-) 411 Protein_280 ATP-binding cassette domain-containing protein -
  GFB63_RS01360 (GFB63_01415) - 281795..282109 (-) 315 Protein_281 TatD family hydrolase -
  GFB63_RS01365 (GFB63_01420) - 282456..283649 (+) 1194 WP_100262689.1 OFA family MFS transporter -
  GFB63_RS01370 (GFB63_01425) - 283709..285060 (-) 1352 Protein_283 IS3 family transposase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72253.45 Da        Isoelectric Point: 5.6761

>NTDB_id=395448 GFB63_RS01340 WP_193838345.1 278962..280932(-) (amiA3) [Streptococcus thermophilus strain TK-P3A]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTAPGTSTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTNKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALKADGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGKDNVVIDINQLSSDDLQN
ATLNAANAAAEDWDISNGVIWAPDYQDPSTYLDIFKTTSSESTKTFMGYDDPNNAAAVQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLKPFTGASIQVGDKNSSDYLKYVKPQEKVVTKKEYEQSREKWLKEK
KESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=395448 GFB63_RS01340 WP_193838345.1 278962..280932(-) (amiA3) [Streptococcus thermophilus strain TK-P3A]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGCACCAGGTACGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACGAATAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCAAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGTTCTAAACTTAATGTTGCCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGAAAGGACAATGTGGTGATTGATATTAACCAATTGTCATCTGATGATTTGCAAAAT
GCAACCCTTAATGCCGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATGGTGTCATTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAGCACTAAGACTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGTCCAAGTAGGACTCAAAGACTATGATGCCTTGCTTAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTATGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGAAACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAGACTACT
TAAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

97.108

100

0.973
  amiA3 Streptococcus thermophilus LMG 18311

96.956

100

0.971
  amiA Streptococcus salivarius strain HSISS4

90.854

100

0.909

Multiple sequence alignment