Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GFB63_RS01320 Genome accession   NZ_CP045596
Coordinates   274460..275389 (-) Length   309 a.a.
NCBI ID   WP_193838344.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 269460..280389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS01295 (GFB63_01350) - 270746..271561 (-) 816 WP_024010001.1 Cof-type HAD-IIB family hydrolase -
  GFB63_RS01300 (GFB63_01355) - 271554..272348 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  GFB63_RS01305 (GFB63_01360) - 272533..272910 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  GFB63_RS01310 (GFB63_01365) - 272915..273613 (+) 699 WP_193838343.1 ABC transporter ATP-binding protein -
  GFB63_RS01315 (GFB63_01370) - 273625..274410 (+) 786 WP_011681414.1 hypothetical protein -
  GFB63_RS01320 (GFB63_01375) amiF 274460..275389 (-) 930 WP_193838344.1 ATP-binding cassette domain-containing protein Regulator
  GFB63_RS01325 (GFB63_01380) amiE 275382..276467 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  GFB63_RS01330 (GFB63_01385) amiD 276477..277403 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  GFB63_RS01335 (GFB63_01390) amiC 277403..278896 (-) 1494 WP_024010009.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35159.31 Da        Isoelectric Point: 6.5989

>NTDB_id=395444 GFB63_RS01320 WP_193838344.1 274460..275389(-) (amiF) [Streptococcus thermophilus strain TK-P3A]
MPEKLVEVKDVEISFGEGKKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVLIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=395444 GFB63_RS01320 WP_193838344.1 274460..275389(-) (amiF) [Streptococcus thermophilus strain TK-P3A]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAAAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCACACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCTTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAATAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.353

100

0.994
  amiF Streptococcus thermophilus LMD-9

99.029

100

0.99
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977

Multiple sequence alignment