Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GFB63_RS01335 Genome accession   NZ_CP045596
Coordinates   277403..278896 (-) Length   497 a.a.
NCBI ID   WP_024010009.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 272403..283896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS01305 (GFB63_01360) - 272533..272910 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  GFB63_RS01310 (GFB63_01365) - 272915..273613 (+) 699 WP_193838343.1 ABC transporter ATP-binding protein -
  GFB63_RS01315 (GFB63_01370) - 273625..274410 (+) 786 WP_011681414.1 hypothetical protein -
  GFB63_RS01320 (GFB63_01375) amiF 274460..275389 (-) 930 WP_193838344.1 ATP-binding cassette domain-containing protein Regulator
  GFB63_RS01325 (GFB63_01380) amiE 275382..276467 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  GFB63_RS01330 (GFB63_01385) amiD 276477..277403 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  GFB63_RS01335 (GFB63_01390) amiC 277403..278896 (-) 1494 WP_024010009.1 ABC transporter permease Regulator
  GFB63_RS01340 (GFB63_01395) amiA3 278962..280932 (-) 1971 WP_193838345.1 peptide ABC transporter substrate-binding protein Regulator
  GFB63_RS01345 (GFB63_01400) - 281169..281359 (-) 191 Protein_279 IS3 family transposase -
  GFB63_RS10405 - 281353..281763 (-) 411 Protein_280 ATP-binding cassette domain-containing protein -
  GFB63_RS01360 (GFB63_01415) - 281795..282109 (-) 315 Protein_281 TatD family hydrolase -
  GFB63_RS01365 (GFB63_01420) - 282456..283649 (+) 1194 WP_100262689.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55835.63 Da        Isoelectric Point: 10.0158

>NTDB_id=395447 GFB63_RS01335 WP_024010009.1 277403..278896(-) (amiC) [Streptococcus thermophilus strain TK-P3A]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRHLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGFPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=395447 GFB63_RS01335 WP_024010009.1 277403..278896(-) (amiC) [Streptococcus thermophilus strain TK-P3A]
ATGAAAAGATACATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACAGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCATCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGAACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAGTACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCGCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATTGGTTCTGAGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGTTCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.378

100

0.964
  amiC Streptococcus thermophilus LMG 18311

96.378

100

0.964
  amiC Streptococcus salivarius strain HSISS4

95.775

100

0.958

Multiple sequence alignment