Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GD578_RS17490 Genome accession   NZ_CP045560
Coordinates   3616573..3618696 (-) Length   707 a.a.
NCBI ID   WP_153518704.1    Uniprot ID   A0AB37CYF5
Organism   Acinetobacter nosocomialis strain AC1530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3611573..3623696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS17475 (GD578_17700) - 3613990..3614865 (-) 876 WP_153518702.1 hypothetical protein -
  GD578_RS17480 (GD578_17705) aroB 3614881..3615963 (-) 1083 WP_002051763.1 3-dehydroquinate synthase -
  GD578_RS17485 (GD578_17710) aroK 3615992..3616561 (-) 570 WP_002051689.1 shikimate kinase AroK -
  GD578_RS17490 (GD578_17715) pilQ 3616573..3618696 (-) 2124 WP_153518704.1 type IV pilus secretin PilQ family protein Machinery gene
  GD578_RS17495 (GD578_17720) pilP 3618759..3619286 (-) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  GD578_RS17500 (GD578_17725) pilO 3619297..3620037 (-) 741 WP_002051671.1 type 4a pilus biogenesis protein PilO Machinery gene
  GD578_RS17505 (GD578_17730) pilN 3620034..3620678 (-) 645 WP_002051643.1 PilN domain-containing protein Machinery gene
  GD578_RS17510 (GD578_17735) comM 3620678..3621736 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76639.16 Da        Isoelectric Point: 6.7725

>NTDB_id=395149 GD578_RS17490 WP_153518704.1 3616573..3618696(-) (pilQ) [Acinetobacter nosocomialis strain AC1530]
MNQVFRQFSMGAVAVAIMQAASAQVSMTNIVPTQVAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSVQPNNKHVPVVTAQPQGISNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPAHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSTPSSKTPTYSGNKLSLDFQDIEVRRVLQLLADFTGINMVTADSVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLSYAKAIDVLKLIEDSRDGKGAVANRTANSDALALESL
LSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDIQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVGG
SETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTAD
KQTAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTNV
LVDNGETVILGGVFEQTTTNTQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=395149 GD578_RS17490 WP_153518704.1 3616573..3618696(-) (pilQ) [Acinetobacter nosocomialis strain AC1530]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTGTTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATAGTACCAACGCAAGTTGCAGGTCAGGGCACAGAAATTAGAGTTATGTTTAATGGATTGCCACCACAGCCAC
AGGCTTACCAACTTGAAAATCCGTCACGTTTAATATTAGATTTTGATAAAGCTCAACAAAGTTTAAAACAGTCTAAAATT
GCTGTTGCAACCAATGAAGCAAGCTCTGTAGATGTAACTTCAGATGATCAACGTTCACGTTTAACTGTAAATTTAAAAGA
TGCTGGAGCGTTTACAACACGTGTGGAAGGTAATACTTTCATTTTAAAAATTAATTCGGTCCAACCGAATAATAAACATG
TACCAGTAGTTACTGCACAACCACAAGGTATTTCAAACATTGGATTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTGGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACTTTAGGTACAAA
AATTCCGGCACATTTGGCGCGTCGTCTAAATGTAAATGATTTTGCAACACCAGTCTCAAGTATTGATGCTTATAATGATA
AAGGTGCTGGTGTAATTACTATTCAGTCATCTGGTAGCTACGAATACATGGCATATCAGGCTGAAAATAAGCTCACAATC
AGTTTGAAACGACCACAAGATAAAAGTACACCTTCTTCAAAAACTCCAACTTATTCTGGAAATAAGCTTTCGCTAGATTT
CCAAGATATTGAAGTACGCCGTGTTCTACAATTGCTGGCTGATTTTACGGGCATCAACATGGTGACGGCTGATAGTGTAC
AAGGCAATATCACGTTACGTTTGAAAGACGTACCTTGGGATCAGGCTCTGGATATTATTTTAAAAACTAAAAATCTTGAT
AAACGTCGTAATGGGAATGTGATTTGGATTGCTCCTGTTGCAGAGTTGATTAAAGCAGAAGATGATGAGGCAAAAGCCTT
GGCGCAAACGATCAAGTTAGCACCGATCCAAACAGATTATATTCGTTTGAGTTATGCGAAAGCGATTGATGTATTAAAGT
TAATCGAAGATTCTCGTGATGGTAAAGGTGCGGTTGCAAATCGTACTGCCAATTCAGATGCTCTTGCTTTAGAGAGTTTA
TTGAGCTCCCGTGGTAGTGCGGTTGCTGATACACGAACTAATACTTTGATTGTAAATGATACAGCACAAAATATTGATAA
AGTTCGTAAAATGATTGAACTGCTCGATATACAAGTTAAACAGGTCATGGTTGAGGCGCGCATTGTAAGAGCATCTACAT
CATTTACCAAAGAACTTGGTGTGAAGTGGGGCATTCTTTCGCAAGGTATCACCAATAATAAAAATTTGTTGGTTGGTGGT
AGTGAAACAACTTTATGGAATTTGCGTGAACCTAAAAAAGATGAAACTACGGGTGGCTATAAATATACGATTGAGCGTCC
TGATAACTTAAACGTTGACTTGGGGGTTTCTAATCCGGCAGGAAGCATTGCTTTTGGTCTTATTAGTATGTCGGACTTCA
TGTTGGATCTTGAGTTATCTGCTTTACAAGCTGATGGTTATGGTGAGGTGATTTCAACACCTAAAGTGATGACCGCCGAT
AAGCAAACTGCGAAAGTTGCAACGGGTCAACAGGTTCCTTATTTAATGACGACCACTTCTGGTGCTGGTTCTACTGCAAC
AACATCATTTAAAGATGCATTGCTAAGCTTGGATGTTACACCGAGTATTACACCTGATGGCAAAATTCAAATGAAATTGG
ATATTTCTAAGGACTCTGTAGCGGGTGAAGCACCAAATGGTGAGCTAATTCTGAATAAGAATAATATCAATACCAATGTG
CTAGTTGATAATGGAGAAACCGTTATTTTGGGTGGTGTATTTGAACAAACAACGACGAATACCCAGACCAAAGTTCCTTT
CTTTGGGGATATTCCTTTGGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAATTATTGATTTTCG
TAACACCACGAATTGTTAATGACACTTTAGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(541-699)

Secretin and TonB N terminus short domain (STN)

(289-332)

AMIN domain (AMIN)

(38-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

87.656

100

0.894
  pilQ Acinetobacter baumannii strain A118

87.517

100

0.893
  comQ Acinetobacter baylyi ADP1

73.259

100

0.744
  pilQ Pseudomonas aeruginosa PAK

39.658

99.151

0.393

Multiple sequence alignment