Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   GD578_RS17500 Genome accession   NZ_CP045560
Coordinates   3619297..3620037 (-) Length   246 a.a.
NCBI ID   WP_002051671.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain AC1530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3614297..3625037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS17480 (GD578_17705) aroB 3614881..3615963 (-) 1083 WP_002051763.1 3-dehydroquinate synthase -
  GD578_RS17485 (GD578_17710) aroK 3615992..3616561 (-) 570 WP_002051689.1 shikimate kinase AroK -
  GD578_RS17490 (GD578_17715) pilQ 3616573..3618696 (-) 2124 WP_153518704.1 type IV pilus secretin PilQ family protein Machinery gene
  GD578_RS17495 (GD578_17720) pilP 3618759..3619286 (-) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  GD578_RS17500 (GD578_17725) pilO 3619297..3620037 (-) 741 WP_002051671.1 type 4a pilus biogenesis protein PilO Machinery gene
  GD578_RS17505 (GD578_17730) pilN 3620034..3620678 (-) 645 WP_002051643.1 PilN domain-containing protein Machinery gene
  GD578_RS17510 (GD578_17735) comM 3620678..3621736 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  GD578_RS17515 (GD578_17740) ponA 3621899..3624457 (+) 2559 WP_031982123.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27608.41 Da        Isoelectric Point: 4.9673

>NTDB_id=395151 GD578_RS17500 WP_002051671.1 3619297..3620037(-) (pilO) [Acinetobacter nosocomialis strain AC1530]
MSQDELQELSLEQTASKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
GNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSISALPRIVTMHDFVIEAAPAKDSKSDIPVLNYSIKAKTYRYIGATEASAQPAKAAAATAPTS
PNAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=395151 GD578_RS17500 WP_002051671.1 3619297..3620037(-) (pilO) [Acinetobacter nosocomialis strain AC1530]
ATGAGTCAAGATGAACTGCAAGAATTATCATTAGAGCAAACAGCTTCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTTGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGCTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTGGGTTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCTCAAGCTCAGGAA
GGTAATTTATTAAATGAATTTCGAGAAAAAGACTCCAAATTACGTAACCTTCAGCAGTATCAAGTGCAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAACAATTGCCGAAAGAAACAGAGATTCCAAGTTTAGTTGAGGATATTAACTTAA
CTGGTGTGAACTCTGGATTGAAATTTAAAAATATTCGTTTAGAGGATGAAGTAAAGCAGGAAATTTTTATTGAACAACCA
ATTGCCATCGAAGCAACAGGCGACTATCACGCTTTCGGTGCTTTCGTAAGTAGTATCTCTGCTTTGCCACGTATTGTGAC
GATGCATGACTTTGTTATAGAGGCTGCTCCAGCTAAAGATAGTAAGTCAGATATTCCTGTGCTTAATTACTCTATTAAAG
CCAAAACCTATCGATATATAGGAGCAACAGAGGCATCGGCACAACCAGCTAAGGCTGCAGCGGCAACTGCACCAACTAGC
CCTAATGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.431

100

0.894
  comO Acinetobacter baylyi ADP1

70.954

97.967

0.695

Multiple sequence alignment