Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GD578_RS17505 Genome accession   NZ_CP045560
Coordinates   3620034..3620678 (-) Length   214 a.a.
NCBI ID   WP_002051643.1    Uniprot ID   A0AB37CZH8
Organism   Acinetobacter nosocomialis strain AC1530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3615034..3625678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS17485 (GD578_17710) aroK 3615992..3616561 (-) 570 WP_002051689.1 shikimate kinase AroK -
  GD578_RS17490 (GD578_17715) pilQ 3616573..3618696 (-) 2124 WP_153518704.1 type IV pilus secretin PilQ family protein Machinery gene
  GD578_RS17495 (GD578_17720) pilP 3618759..3619286 (-) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  GD578_RS17500 (GD578_17725) pilO 3619297..3620037 (-) 741 WP_002051671.1 type 4a pilus biogenesis protein PilO Machinery gene
  GD578_RS17505 (GD578_17730) pilN 3620034..3620678 (-) 645 WP_002051643.1 PilN domain-containing protein Machinery gene
  GD578_RS17510 (GD578_17735) comM 3620678..3621736 (-) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  GD578_RS17515 (GD578_17740) ponA 3621899..3624457 (+) 2559 WP_031982123.1 penicillin-binding protein PBP1a -
  GD578_RS17520 (GD578_17745) - 3624475..3625299 (-) 825 WP_147520483.1 putative RNA methyltransferase -
  GD578_RS17525 (GD578_17750) - 3625302..3625634 (-) 333 WP_002051722.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24256.64 Da        Isoelectric Point: 6.0119

>NTDB_id=395152 GD578_RS17505 WP_002051643.1 3620034..3620678(-) (pilN) [Acinetobacter nosocomialis strain AC1530]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFSGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=395152 GD578_RS17505 WP_002051643.1 3620034..3620678(-) (pilN) [Acinetobacter nosocomialis strain AC1530]
ATGGCAACAATTAACTTACTACCTTGGCGTGAAGAGCTAAGGGAACAACGAAAAAAACAATTTATAACTTTATGCTTTGG
TGTGGTTGTTTTGGGGATTACAACCGTATTTAGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACAAAATTCAGTCGAGTGGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACAGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGATAAGCCAGCCGTAGCGAAAGACACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

90.654

100

0.907
  comN Acinetobacter baylyi ADP1

72.5

93.458

0.678

Multiple sequence alignment