Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HICON_RS03790 Genome accession   NC_014922
Coordinates   770544..771341 (+) Length   265 a.a.
NCBI ID   WP_013527435.1    Uniprot ID   -
Organism   Haemophilus influenzae F3047     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 765544..776341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS03770 (HICON_09720) recR 765702..766304 (-) 603 WP_005626527.1 recombination mediator RecR -
  HICON_RS03775 (HICON_09730) - 766435..766764 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  HICON_RS03780 (HICON_09740) - 766933..767778 (-) 846 WP_013527433.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  HICON_RS03785 (HICON_09750) - 767851..770445 (-) 2595 WP_013527434.1 penicillin-binding protein 1A -
  HICON_RS03790 (HICON_09760) comA 770544..771341 (+) 798 WP_013527435.1 pilus assembly protein PilM Machinery gene
  HICON_RS03795 (HICON_09770) comB 771342..771848 (+) 507 WP_006995134.1 competence protein ComB Machinery gene
  HICON_RS03800 comC 771845..772366 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  HICON_RS03805 (HICON_09790) comD 772363..772776 (+) 414 WP_013527437.1 pilus assembly protein PilP Machinery gene
  HICON_RS03810 (HICON_09800) comE 772786..774123 (+) 1338 WP_013527438.1 type IV pilus secretin PilQ Machinery gene
  HICON_RS03815 (HICON_09810) - 774136..774822 (+) 687 WP_011272045.1 ComF family protein -
  HICON_RS03820 (HICON_09820) nfuA 774898..775494 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31571.97 Da        Isoelectric Point: 6.2348

>NTDB_id=39451 HICON_RS03790 WP_013527435.1 770544..771341(+) (comA) [Haemophilus influenzae F3047]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=39451 HICON_RS03790 WP_013527435.1 770544..771341(+) (comA) [Haemophilus influenzae F3047]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCATCAAATGCTGTTTTGCGTGCA
TTTCAATATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.491

100

0.985
  comA Haemophilus influenzae 86-028NP

96.981

100

0.97

Multiple sequence alignment