Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GYMC52_RS04015 Genome accession   NC_014915
Coordinates   790803..792626 (+) Length   607 a.a.
NCBI ID   WP_013523174.1    Uniprot ID   -
Organism   Geobacillus sp. Y412MC52     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 785803..797626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC52_RS03995 (GYMC52_0743) - 786132..786791 (-) 660 WP_013523170.1 TerC family protein -
  GYMC52_RS04000 (GYMC52_0744) mecA 787002..787682 (+) 681 WP_013523171.1 adaptor protein MecA -
  GYMC52_RS04005 (GYMC52_0745) cls 787779..789287 (+) 1509 WP_013523172.1 cardiolipin synthase -
  GYMC52_RS04010 (GYMC52_0746) - 789475..790803 (+) 1329 WP_013523173.1 competence protein CoiA -
  GYMC52_RS04015 (GYMC52_0747) pepF 790803..792626 (+) 1824 WP_013523174.1 oligoendopeptidase F Regulator
  GYMC52_RS04020 (GYMC52_0748) - 792640..792837 (-) 198 WP_013523175.1 hypothetical protein -
  GYMC52_RS04025 (GYMC52_0749) spxH 793263..794156 (-) 894 WP_011230325.1 ClpXP adapter protein SpxH -
  GYMC52_RS04030 (GYMC52_0750) - 794149..794562 (-) 414 WP_011230326.1 hypothetical protein -
  GYMC52_RS04035 (GYMC52_0751) - 794665..795288 (-) 624 WP_011230327.1 lytic transglycosylase domain-containing protein -
  GYMC52_RS04040 (GYMC52_0752) - 795285..795878 (-) 594 WP_011230328.1 CYTH domain-containing protein -
  GYMC52_RS04045 (GYMC52_0753) - 796014..796391 (+) 378 WP_013523176.1 hypothetical protein -
  GYMC52_RS04050 (GYMC52_0754) - 796519..797157 (+) 639 WP_011230330.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70330.41 Da        Isoelectric Point: 4.9959

>NTDB_id=39365 GYMC52_RS04015 WP_013523174.1 790803..792626(+) (pepF) [Geobacillus sp. Y412MC52]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALQCQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NTLAGTVKKDNFFARIRRYRSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQEV
KMEVTYEEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLRTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLTSLYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVRRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=39365 GYMC52_RS04015 WP_013523174.1 790803..792626(+) (pepF) [Geobacillus sp. Y412MC52]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCGGTGGAAGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAGTTCAAACAAGTGAAGGCAATGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGCTGTATGAAGCATTGCAATGCCAAGATGACGTATCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACCAACTCGTTTTACCAAGGGCTTGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAAATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCGGAAGAGGAGGCGATCTTGGCGCAGGCAGCCGAGGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGATGAAAACGGCGAGGAAGTCGAAGTCACGCACGGCCGGTTCATCCGCTTTTTAG
AAAGCACGGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAATACGTTCGCC
AATACGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGCATCCGCCGCTACCGTTCGGCGCGGGAAGCGGCGTT
GGATGCGAACAACATTCCGGAGAGCGTCTATGACAACCTAATTGCTACGATTCATGAACATTTGCCATTGCTGCACCGGT
ATGTGCGGCTGCGCAAACGAGTGCTTGGGCTTGATGAGCTGCATATGTACGATTTGTACACGCCGCTTGTGCAAGAAGTG
AAAATGGAAGTGACGTACGAGGAAGCGAAGCAATATATGCTTGAAGGGCTCGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTGAAAGAAGGTCTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAGCGAAGCGGCGCCTATTCGTCGGGAG
CGTACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAGTTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCGTATGCGCATTATTCAATTTTCGTCGCCGAAGTGGC
GTCGACGTGCAATGAGGCGCTGTTGAACGACTATTTGCTGAGAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCGGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGCGAGGCATTGACGGCCGAGACGTTGACGTCCCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCGCATTTTTATTACAACTACTATGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGACTGCACTTAGTAAACAAATTTTGGAAGAAGGCGAACCGGCGGTGAGACGGTACATCGAC
TTTTTAAAAGCCGGCAGTTCTGATTACCCGATTGAAGTATTGAAAAAAGCCGGCGTCGACATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAGCGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

97.694

0.501

Multiple sequence alignment