Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   HICON_RS00940 Genome accession   NC_014922
Coordinates   204712..205428 (-) Length   238 a.a.
NCBI ID   WP_032826301.1    Uniprot ID   -
Organism   Haemophilus influenzae F3047     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199712..210428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS00920 (HICON_04570) nrdR 199804..200253 (-) 450 WP_013527273.1 transcriptional regulator NrdR -
  HICON_RS00925 (HICON_04580) recC 200308..203688 (-) 3381 WP_041175139.1 exodeoxyribonuclease V subunit gamma -
  HICON_RS00930 (HICON_04590) comQ 203734..204021 (-) 288 WP_006995601.1 DUF5374 domain-containing protein Machinery gene
  HICON_RS00935 (HICON_04600) comP 204014..204697 (-) 684 WP_013527275.1 DUF2572 family protein Machinery gene
  HICON_RS00940 (HICON_04610) comO 204712..205428 (-) 717 WP_032826301.1 type II secretion system protein J Machinery gene
  HICON_RS00945 (HICON_04620) comN 205422..205940 (-) 519 WP_013527276.1 type II secretion system protein Machinery gene
  HICON_RS00950 (HICON_04630) suhB 206140..206943 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  HICON_RS00955 (HICON_04640) nrfE 207052..208959 (+) 1908 WP_006995596.1 heme lyase NrfEFG subunit NrfE -
  HICON_RS00960 (HICON_04650) - 208959..209489 (+) 531 WP_006995595.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26745.09 Da        Isoelectric Point: 9.5508

>NTDB_id=39440 HICON_RS00940 WP_032826301.1 204712..205428(-) (comO) [Haemophilus influenzae F3047]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=39440 HICON_RS00940 WP_032826301.1 204712..205428(-) (comO) [Haemophilus influenzae F3047]
ATCATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCGCTGGCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAATCAACACATGTTATTGCATTTAAAACTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACGTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.739

100

0.987

Multiple sequence alignment