Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   HICON_RS00945 Genome accession   NC_014922
Coordinates   205422..205940 (-) Length   172 a.a.
NCBI ID   WP_013527276.1    Uniprot ID   A0AAV2TZF3
Organism   Haemophilus influenzae F3047     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200422..210940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS00930 (HICON_04590) comQ 203734..204021 (-) 288 WP_006995601.1 DUF5374 domain-containing protein Machinery gene
  HICON_RS00935 (HICON_04600) comP 204014..204697 (-) 684 WP_013527275.1 DUF2572 family protein Machinery gene
  HICON_RS00940 (HICON_04610) comO 204712..205428 (-) 717 WP_032826301.1 type II secretion system protein J Machinery gene
  HICON_RS00945 (HICON_04620) comN 205422..205940 (-) 519 WP_013527276.1 type II secretion system protein Machinery gene
  HICON_RS00950 (HICON_04630) suhB 206140..206943 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  HICON_RS00955 (HICON_04640) nrfE 207052..208959 (+) 1908 WP_006995596.1 heme lyase NrfEFG subunit NrfE -
  HICON_RS00960 (HICON_04650) - 208959..209489 (+) 531 WP_006995595.1 DsbE family thiol:disulfide interchange protein -
  HICON_RS00965 (HICON_04660) nrfF 209486..210640 (+) 1155 WP_013527277.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19927.08 Da        Isoelectric Point: 9.3930

>NTDB_id=39441 HICON_RS00945 WP_013527276.1 205422..205940(-) (comN) [Haemophilus influenzae F3047]
MQKGMTLVELLIGLAIISIVLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNDQTCDCLNPTNCPKEAYAHFYYPYFPKKTMIQSHYIYPKEITRFYGARNTSVTRCFILQAENERTLFSFFNVGSIRL
KTNQAASACNQS

Nucleotide


Download         Length: 519 bp        

>NTDB_id=39441 HICON_RS00945 WP_013527276.1 205422..205940(-) (comN) [Haemophilus influenzae F3047]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATGATCAAACTTGCGATTGTTTAAACCCAACAAACTGCCCGAAAGAGGCCTATGCTCATTTTTACTATCCTTA
TTTTCCTAAAAAAACGATGATTCAAAGCCATTATATTTATCCCAAAGAAATCACGAGGTTTTATGGTGCTCGTAATACCA
GTGTCACTCGTTGCTTTATTCTGCAAGCGGAGAATGAACGTACATTATTTTCATTTTTCAATGTAGGCAGTATCCGTTTG
AAAACCAATCAAGCGGCTAGTGCATGCAATCAATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

92.353

98.837

0.913

Multiple sequence alignment