Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   HIBPF_RS06510 Genome accession   NC_014920
Coordinates   1287616..1288332 (-) Length   238 a.a.
NCBI ID   WP_013526182.1    Uniprot ID   -
Organism   Haemophilus influenzae F3031     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282616..1293332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIBPF_RS06490 (HIBPF13600) nrdR 1282708..1283157 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  HIBPF_RS06495 (HIBPF13610) recC 1283212..1286592 (-) 3381 WP_041174963.1 exodeoxyribonuclease V subunit gamma -
  HIBPF_RS06500 (HIBPF13650) comQ 1286638..1286925 (-) 288 WP_041174964.1 DUF5374 domain-containing protein Machinery gene
  HIBPF_RS06505 (HIBPF13660) comP 1286918..1287601 (-) 684 WP_013526181.1 DUF2572 family protein Machinery gene
  HIBPF_RS06510 (HIBPF13670) comO 1287616..1288332 (-) 717 WP_013526182.1 type II secretion system protein J Machinery gene
  HIBPF_RS06515 (HIBPF13680) comN 1288332..1288844 (-) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIBPF_RS06520 (HIBPF13690) suhB 1289044..1289847 (+) 804 WP_013526184.1 inositol-1-monophosphatase -
  HIBPF_RS06525 (HIBPF13700) nrfE 1289956..1291863 (+) 1908 WP_013526185.1 heme lyase NrfEFG subunit NrfE -
  HIBPF_RS06530 (HIBPF13710) - 1291863..1292393 (+) 531 WP_013526186.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26711.06 Da        Isoelectric Point: 9.5508

>NTDB_id=39415 HIBPF_RS06510 WP_013526182.1 1287616..1288332(-) (comO) [Haemophilus influenzae F3031]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHILLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNIGYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=39415 HIBPF_RS06510 WP_013526182.1 1287616..1288332(-) (comO) [Haemophilus influenzae F3031]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATACTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCGGTTATGAAACATCCCTTGTTGTTGCACTTTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.739

100

0.987

Multiple sequence alignment