Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FIV01_RS01725 | Genome accession | NZ_CP045350 |
| Coordinates | 360756..361304 (+) | Length | 182 a.a. |
| NCBI ID | WP_152429457.1 | Uniprot ID | A0A5P9CFU1 |
| Organism | Vibrio aquimaris strain THAF100 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 355756..366304
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIV01_RS01710 (FIV01_01700) | uvrA | 355908..358730 (-) | 2823 | WP_152429454.1 | excinuclease ABC subunit UvrA | - |
| FIV01_RS01715 (FIV01_01705) | galU | 358859..359731 (-) | 873 | WP_152429455.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| FIV01_RS01720 (FIV01_01710) | qstR | 359838..360485 (-) | 648 | WP_152429456.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| FIV01_RS01725 (FIV01_01715) | ssb | 360756..361304 (+) | 549 | WP_152429457.1 | single-stranded DNA-binding protein | Machinery gene |
| FIV01_RS01730 (FIV01_01720) | csrD | 361451..363466 (+) | 2016 | WP_152429458.1 | RNase E specificity factor CsrD | - |
| FIV01_RS01735 (FIV01_01725) | - | 363463..364902 (+) | 1440 | WP_152429459.1 | MSHA biogenesis protein MshI | - |
| FIV01_RS01740 (FIV01_01730) | gspM | 364902..365549 (+) | 648 | WP_152431627.1 | type II secretion system protein GspM | - |
| FIV01_RS01745 (FIV01_01735) | - | 365542..365865 (+) | 324 | WP_152429460.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20159.20 Da Isoelectric Point: 4.9269
>NTDB_id=393559 FIV01_RS01725 WP_152429457.1 360756..361304(+) (ssb) [Vibrio aquimaris strain THAF100]
MASRGINKVILVGNLGSDPEVRYMPNGGAVANITIATSESWRDKTTGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAQSMGQPQQQGGWGQPQQPAMQQNQAPQTQQNYSQPS
NQSPSQPQYNEPPMDFDDDIPF
MASRGINKVILVGNLGSDPEVRYMPNGGAVANITIATSESWRDKTTGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAQSMGQPQQQGGWGQPQQPAMQQNQAPQTQQNYSQPS
NQSPSQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=393559 FIV01_RS01725 WP_152429457.1 360756..361304(+) (ssb) [Vibrio aquimaris strain THAF100]
ATGGCGAGCCGTGGAATCAACAAAGTTATATTAGTCGGTAATCTGGGCTCTGATCCAGAAGTGCGTTATATGCCAAATGG
TGGTGCCGTTGCAAATATTACAATAGCGACCTCTGAAAGTTGGCGTGATAAGACGACAGGAGAGCAGCGCGAGAAAACAG
AGTGGCATCGTGTATCTTTGTTTGGCAAGTTAGCTGAAGTAGCTGGTGAGTATTTACGCAAAGGTTCCCAAGTTTATATC
GAAGGTCAACTTCAGACTCGAAAGTGGCAAGATCAGAATGGCCAGGATCGTTATTCAACGGAAGTGGTGGTTCAGGGCTT
CAATGGTGTTATGCAAATGTTGGGTGGTCGTGCTCAAGGTGGTGCGCCGGCTCAAAGTATGGGACAACCGCAACAGCAAG
GTGGTTGGGGACAACCTCAACAGCCTGCAATGCAACAAAACCAAGCTCCTCAAACACAGCAAAACTATTCTCAACCCTCG
AATCAATCGCCCAGTCAGCCTCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCATTCTAA
ATGGCGAGCCGTGGAATCAACAAAGTTATATTAGTCGGTAATCTGGGCTCTGATCCAGAAGTGCGTTATATGCCAAATGG
TGGTGCCGTTGCAAATATTACAATAGCGACCTCTGAAAGTTGGCGTGATAAGACGACAGGAGAGCAGCGCGAGAAAACAG
AGTGGCATCGTGTATCTTTGTTTGGCAAGTTAGCTGAAGTAGCTGGTGAGTATTTACGCAAAGGTTCCCAAGTTTATATC
GAAGGTCAACTTCAGACTCGAAAGTGGCAAGATCAGAATGGCCAGGATCGTTATTCAACGGAAGTGGTGGTTCAGGGCTT
CAATGGTGTTATGCAAATGTTGGGTGGTCGTGCTCAAGGTGGTGCGCCGGCTCAAAGTATGGGACAACCGCAACAGCAAG
GTGGTTGGGGACAACCTCAACAGCCTGCAATGCAACAAAACCAAGCTCCTCAAACACAGCAAAACTATTCTCAACCCTCG
AATCAATCGCCCAGTCAGCCTCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
79.891 |
100 |
0.808 |
| ssb | Glaesserella parasuis strain SC1401 |
54.497 |
100 |
0.566 |
| ssb | Neisseria meningitidis MC58 |
44.503 |
100 |
0.467 |
| ssb | Neisseria gonorrhoeae MS11 |
46.409 |
99.451 |
0.462 |