Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   FIV01_RS01720 Genome accession   NZ_CP045350
Coordinates   359838..360485 (-) Length   215 a.a.
NCBI ID   WP_152429456.1    Uniprot ID   -
Organism   Vibrio aquimaris strain THAF100     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 354838..365485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS01710 (FIV01_01700) uvrA 355908..358730 (-) 2823 WP_152429454.1 excinuclease ABC subunit UvrA -
  FIV01_RS01715 (FIV01_01705) galU 358859..359731 (-) 873 WP_152429455.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FIV01_RS01720 (FIV01_01710) qstR 359838..360485 (-) 648 WP_152429456.1 LuxR C-terminal-related transcriptional regulator Regulator
  FIV01_RS01725 (FIV01_01715) ssb 360756..361304 (+) 549 WP_152429457.1 single-stranded DNA-binding protein Machinery gene
  FIV01_RS01730 (FIV01_01720) csrD 361451..363466 (+) 2016 WP_152429458.1 RNase E specificity factor CsrD -
  FIV01_RS01735 (FIV01_01725) - 363463..364902 (+) 1440 WP_152429459.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25203.22 Da        Isoelectric Point: 8.7457

>NTDB_id=393558 FIV01_RS01720 WP_152429456.1 359838..360485(-) (qstR) [Vibrio aquimaris strain THAF100]
MAKNIYARTIYFLTEKNQQNDPVIDQVQKQLCVEIPYIEPNDLMYAMQLHKHKILMIDHQYYQTLNNQIRDLPLSNKMFE
TILFNVEKRLTTEEILCFGNIKALFYRHESIESIARGCGEVINSQNWLPRKVTAQLIHYYRHVILSQTSPATVDLTSREI
QILRCLKTGASNLQIADDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQHMLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=393558 FIV01_RS01720 WP_152429456.1 359838..360485(-) (qstR) [Vibrio aquimaris strain THAF100]
ATGGCTAAAAATATCTATGCTCGAACGATTTACTTTCTCACCGAAAAAAATCAGCAAAATGATCCTGTCATCGATCAAGT
CCAAAAACAGCTGTGTGTTGAAATTCCTTATATTGAGCCTAACGACCTCATGTATGCGATGCAATTACACAAGCATAAGA
TATTGATGATAGATCATCAGTATTACCAGACACTAAACAATCAAATTCGTGATCTTCCACTCTCCAATAAAATGTTTGAA
ACGATTTTATTTAATGTAGAAAAACGGCTAACTACCGAGGAAATACTCTGCTTTGGGAATATAAAAGCCCTATTTTATCG
CCATGAATCTATAGAGTCGATAGCTAGAGGATGTGGAGAAGTCATCAATAGCCAAAACTGGTTGCCACGTAAAGTCACAG
CACAACTGATTCACTATTATAGGCACGTCATACTGAGTCAAACTTCTCCAGCAACAGTCGACCTAACCTCTAGAGAAATC
CAGATTTTACGCTGCCTAAAAACGGGAGCTTCCAACCTGCAAATTGCGGACGACCTGTTTATCAGTGAATTTACAGTAAA
GTCGCACCTTTATCAGATTTTTAAAAAGCTATCAGTCAAAAACAGAGTACAAGCCATTGCTTGGGCTAATCAGCATATGC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

59.346

99.535

0.591
  qstR Vibrio campbellii strain DS40M4

54.884

100

0.549
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54

Multiple sequence alignment