Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ALIDE_RS01325 Genome accession   NC_014910
Coordinates   297101..298636 (-) Length   511 a.a.
NCBI ID   WP_013517182.1    Uniprot ID   -
Organism   Alicycliphilus denitrificans BC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 292101..303636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALIDE_RS01305 (Alide_0263) - 292258..295158 (+) 2901 WP_013517181.1 C1 family peptidase -
  ALIDE_RS24925 (Alide_0264) - 295191..296252 (-) 1062 WP_337999229.1 TonB-dependent receptor plug domain-containing protein -
  ALIDE_RS24930 - 296396..296515 (-) 120 Protein_265 FecR/PupR family sigma factor regulator -
  ALIDE_RS01320 (Alide_0265) - 296512..296895 (-) 384 WP_238530631.1 sigma-70 family RNA polymerase sigma factor -
  ALIDE_RS24885 - 296921..297043 (-) 123 WP_258007471.1 hypothetical protein -
  ALIDE_RS01325 (Alide_0266) comM 297101..298636 (-) 1536 WP_013517182.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ALIDE_RS01330 (Alide_0267) - 298775..299506 (+) 732 WP_013517183.1 TorF family putative porin -
  ALIDE_RS01335 (Alide_0268) glnK 299526..299864 (+) 339 WP_013517184.1 P-II family nitrogen regulator -
  ALIDE_RS01340 (Alide_0269) - 299887..301275 (+) 1389 WP_013517185.1 ammonium transporter -
  ALIDE_RS01345 (Alide_0270) - 301369..302247 (+) 879 WP_013517186.1 LysR substrate-binding domain-containing protein -
  ALIDE_RS01350 (Alide_0271) - 302321..303196 (-) 876 WP_013517187.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53620.46 Da        Isoelectric Point: 7.8155

>NTDB_id=39330 ALIDE_RS01325 WP_013517182.1 297101..298636(-) (comM) [Alicycliphilus denitrificans BC]
MSLALVQSRALLGLQASAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPTNKKITVNLAPADLPKDSG
RYDLPIALGILAASGQIAAERLAGWEFAGELSLSGLLRPVRGALATSLALRAEQPPVRMVLPPGSAEEAALVPGAEIYRA
RHLLDVVRQFLPAAAPPQEDDDGWQRLAPAAPAVHTSSPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLAQR
FASLLPPMSVEQALESAAIASLAGRFTGAQWMQRVTASPHHSCSAVALVGGGSPPRPGEISLAHEGVLFLDEFPEFARSA
LEALREPLETGLITISRAAQRAEFPARFQLVAAMNPCPCGFAGSAQRACRCTPDQVARYQGKLSGPLLDRIDLHVEVPHL
PAEDLLNAPAGEASSAVRERVARAHALALARQGTPNQALQGQQLDRMAALDEAAARFLQTAAARMGWSARGTHRALKVAR
TIADLAASEQVGMAHVAEAVQYRRVLRGTQA

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=39330 ALIDE_RS01325 WP_013517182.1 297101..298636(-) (comM) [Alicycliphilus denitrificans BC]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCAGGCAAGCGCCGTCACCGTGGAGGTGCATCTGGCCAA
CGGCCTGCCGAGCTTCGCGCTCGTGGGCCTGGCCGACGTGGAGGTGAAGGAGGCGCGCGAGCGCGTGCGCTCGGCCCTGC
AGAACGCGGGGCTGGAGTTCCCCACCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGACTCGGGG
CGCTACGACCTGCCCATCGCCCTGGGTATCCTGGCCGCCAGCGGGCAGATCGCCGCTGAACGCCTGGCGGGCTGGGAGTT
CGCGGGCGAGCTATCGCTGTCGGGCCTGCTGCGGCCCGTGCGCGGCGCGCTGGCCACCAGCCTGGCGCTGCGCGCCGAGC
AGCCGCCCGTGCGCATGGTGCTGCCGCCGGGCAGCGCCGAGGAGGCCGCCCTGGTGCCCGGCGCCGAGATCTACCGCGCG
CGCCACCTGCTGGACGTGGTGCGCCAGTTCCTGCCCGCAGCCGCGCCGCCGCAGGAAGACGACGACGGCTGGCAGCGCCT
GGCGCCGGCCGCGCCCGCCGTCCACACCAGCAGCCCCGACCTTGCTGACGTGAAGGGCCAGGCCGCCGCCAAGCGCGCAC
TGGAAATCGCCGCAGCCGGCGGCCATGGGCTGCTGCTCGTGGGCCCTCCGGGCTCGGGCAAATCCATGCTGGCGCAGCGC
TTCGCCAGCCTGCTGCCGCCGATGAGCGTGGAGCAGGCGCTGGAGAGCGCGGCCATCGCCAGCCTGGCCGGGCGCTTCAC
GGGCGCGCAGTGGATGCAGCGCGTCACGGCCAGCCCGCACCACAGCTGCAGCGCCGTCGCACTGGTGGGCGGGGGATCGC
CGCCGCGGCCCGGCGAGATCTCGCTGGCGCACGAGGGAGTCCTGTTCCTCGACGAGTTCCCCGAATTCGCACGCAGCGCC
CTGGAGGCCCTGCGCGAGCCGCTGGAGACCGGCCTCATCACCATCTCGCGCGCGGCGCAGCGCGCCGAGTTCCCGGCGCG
CTTTCAGCTCGTCGCCGCCATGAACCCCTGCCCCTGCGGCTTCGCGGGCTCCGCCCAGCGCGCCTGCCGCTGCACGCCGG
ACCAGGTGGCGCGCTACCAGGGCAAGCTGAGCGGCCCGTTGCTCGACCGCATAGACCTGCACGTGGAGGTGCCGCACCTG
CCCGCCGAGGACCTGCTGAACGCCCCCGCCGGCGAGGCGAGCAGCGCCGTGCGCGAGCGCGTGGCCCGCGCCCACGCGCT
GGCCCTGGCGCGCCAGGGCACGCCCAACCAAGCACTGCAAGGCCAGCAGCTCGACCGCATGGCCGCGCTGGACGAGGCCG
CAGCGCGCTTCCTGCAGACCGCCGCCGCGCGCATGGGCTGGTCGGCGCGCGGCACGCACCGCGCGCTGAAGGTGGCACGC
ACCATCGCCGACCTGGCGGCGTCGGAGCAGGTGGGCATGGCCCATGTGGCCGAGGCGGTGCAGTACAGGCGGGTGCTGCG
CGGCACGCAGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.765

99.804

0.517
  comM Haemophilus influenzae Rd KW20

49.904

100

0.509
  comM Glaesserella parasuis strain SC1401

49.518

100

0.503
  comM Vibrio campbellii strain DS40M4

49.902

99.609

0.497
  comM Legionella pneumophila str. Paris

48.054

100

0.483
  comM Legionella pneumophila strain ERS1305867

48.054

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

100

0.434

Multiple sequence alignment