Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HK441_RS01455 Genome accession   NZ_CP053394
Coordinates   319926..320393 (-) Length   155 a.a.
NCBI ID   WP_001916785.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP1352     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 314926..325393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK441_RS01440 (HK441_01440) - 315317..316099 (-) 783 WP_001916789.1 glycosyltransferase family 2 protein -
  HK441_RS01445 (HK441_01445) tlpB 316131..317828 (-) 1698 WP_001916788.1 methyl-accepting chemotaxis protein TlpB -
  HK441_RS01450 (HK441_01450) - 318042..319787 (-) 1746 WP_001916787.1 5'-nucleotidase C-terminal domain-containing protein -
  HK441_RS01455 (HK441_01455) luxS 319926..320393 (-) 468 WP_001916785.1 S-ribosylhomocysteine lyase Regulator
  HK441_RS01460 (HK441_01460) - 320428..321570 (-) 1143 WP_001916784.1 cystathionine gamma-synthase -
  HK441_RS01465 (HK441_01465) - 321591..322508 (-) 918 WP_001916783.1 O-acetylserine-dependent cystathionine beta-synthase -
  HK441_RS01470 (HK441_01470) - 322623..323216 (+) 594 WP_001916782.1 hypothetical protein -
  HK441_RS01475 (HK441_01475) dnaK 323375..325237 (-) 1863 WP_001916781.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17648.21 Da        Isoelectric Point: 7.1165

>NTDB_id=391968 HK441_RS01455 WP_001916785.1 319926..320393(-) (luxS) [Helicobacter pylori strain HP1352]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=391968 HK441_RS01455 WP_001916785.1 319926..320393(-) (luxS) [Helicobacter pylori strain HP1352]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCATCAAATACGATGTGCGCCTCAAACAACCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCACGCTAGTTATGTTGTAGATTGGTCGCCT
ATGGGTTGCCAAACAGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCCAAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374

Multiple sequence alignment