Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GBN93_RS16480 Genome accession   NZ_CP045103
Coordinates   3421708..3422364 (-) Length   218 a.a.
NCBI ID   WP_184117975.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3416708..3427364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS16460 (GBN93_16515) aroK 3417778..3418311 (-) 534 WP_062032260.1 shikimate kinase AroK -
  GBN93_RS16465 (GBN93_16520) pilQ 3418349..3420427 (-) 2079 WP_234964931.1 type IV pilus secretin PilQ family protein Machinery gene
  GBN93_RS16470 (GBN93_16525) pilP 3420447..3420974 (-) 528 WP_184117976.1 pilus assembly protein PilP Machinery gene
  GBN93_RS16475 (GBN93_16530) pilO 3420974..3421711 (-) 738 WP_168158667.1 type 4a pilus biogenesis protein PilO Machinery gene
  GBN93_RS16480 (GBN93_16535) pilN 3421708..3422364 (-) 657 WP_184117975.1 PilN domain-containing protein Machinery gene
  GBN93_RS16485 (GBN93_16540) pilM 3422364..3423422 (-) 1059 WP_087527293.1 pilus assembly protein PilM Machinery gene
  GBN93_RS16490 (GBN93_16545) ponA 3423588..3426116 (+) 2529 WP_234964932.1 penicillin-binding protein PBP1a -
  GBN93_RS16495 (GBN93_16550) - 3426148..3426954 (-) 807 WP_234964933.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24166.60 Da        Isoelectric Point: 5.1439

>NTDB_id=391969 GBN93_RS16480 WP_184117975.1 3421708..3422364(-) (pilN) [Acinetobacter johnsonii strain AJ413]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEEAYGTFVVTADLDEIAQPVAPDATAPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=391969 GBN93_RS16480 WP_184117975.1 3421708..3422364(-) (pilN) [Acinetobacter johnsonii strain AJ413]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTTGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTTCAATTAAAGTCGTTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGTCCTGTGGCTGTTCGTTTGGTCGATGAAATGGTACG
TGTTACACCAAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGAAATCTCGAAGCATCTGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTGTTGAAGAAGCCTATGGCACCTTTGTGGTCACCGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTGATGCGACCGCACCTGAAGCCGCAAGCACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.856

95.872

0.67
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665

Multiple sequence alignment