Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F9K07_RS01550 Genome accession   NZ_CP044549
Coordinates   329437..330987 (-) Length   516 a.a.
NCBI ID   WP_159588709.1    Uniprot ID   -
Organism   Hydrogenophaga sp. BPS33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 324437..335987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9K07_RS01525 (F9K07_01535) - 325239..326261 (+) 1023 WP_159588703.1 ABC transporter substrate-binding protein -
  F9K07_RS01530 (F9K07_01540) - 326360..327091 (+) 732 WP_159596774.1 ABC transporter ATP-binding protein -
  F9K07_RS01535 (F9K07_01545) - 327100..327942 (+) 843 WP_236581774.1 ABC transporter permease -
  F9K07_RS01540 (F9K07_01550) - 327959..328363 (+) 405 WP_159588705.1 VOC family protein -
  F9K07_RS01545 (F9K07_01555) - 328461..329432 (+) 972 WP_159588707.1 helix-turn-helix transcriptional regulator -
  F9K07_RS01550 (F9K07_01560) comM 329437..330987 (-) 1551 WP_159588709.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F9K07_RS01555 (F9K07_01565) glnK 331305..331643 (+) 339 WP_159588711.1 P-II family nitrogen regulator -
  F9K07_RS01560 (F9K07_01570) amt 331675..333090 (+) 1416 WP_159588713.1 ammonium transporter -
  F9K07_RS01565 (F9K07_01575) - 333187..334671 (-) 1485 WP_159588715.1 M81 family metallopeptidase -
  F9K07_RS01570 (F9K07_01580) - 334690..335712 (-) 1023 WP_159588717.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 54441.32 Da        Isoelectric Point: 8.3952

>NTDB_id=390946 F9K07_RS01550 WP_159588709.1 329437..330987(-) (comM) [Hydrogenophaga sp. BPS33]
MGLSLVRSRALLGLDARPVCVEVHLANGLPSFTLVGLADTEVKEARERVRSAIANAGLEFPTNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGARMEGWEFAGELSLGGELRPVRGALAMSLALHRSATAAGPATRLVLPAGSAEEAALVPTAQ
VYRAHHLLDVVERFLPEQAAEAGPPAADRWSRLVPTALGKAPAYADLADVKGQAAAKRALEIAAAGGHSLLMVGPPGSGK
SMLAQRFAGLLPPMDTTEALEAAAVASLAGRFTLDRWGQRPTCAPHHSASAVALVGGGSPPRPGEISLAHHGVLFLDELP
EFPRSALEALREPLESGHIRISRAAAQSEFPARFQLIGAMNPCPCGFLGHPTKPCRDTPDQVARYQGKLSGPLLDRIDLH
VEVPALPAQELLRGGMNEPSAEVRARVVAARQRAQDRQHSANQALAGRALEQHVNAEPEALQFLQTTAARLGWSARSTHR
ALRVARTIADLAEAPAVGVGHLAEAVQYRRVLRQPG

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=390946 F9K07_RS01550 WP_159588709.1 329437..330987(-) (comM) [Hydrogenophaga sp. BPS33]
ATGGGTCTGTCTTTGGTGCGCAGCCGCGCCTTGCTTGGCCTGGACGCGCGTCCGGTGTGTGTGGAAGTGCATCTGGCCAA
CGGGCTGCCCAGCTTCACCCTGGTGGGCCTGGCCGACACGGAAGTCAAGGAAGCGCGCGAGCGCGTGCGTTCGGCCATTG
CCAACGCGGGGCTGGAGTTCCCGACGAACAAGCGCATCACGGTCAACCTCGCGCCGGCCGACCTGCCCAAGGACTCGGGC
CGTTTCGATCTCCCGATCGCGCTGGGCATCCTCGCCGCCAGCGGCCAGATTGACGGCGCGCGCATGGAGGGCTGGGAGTT
CGCGGGCGAACTCTCGCTGGGTGGCGAGTTGCGCCCGGTGCGGGGGGCGCTGGCGATGAGCCTCGCACTGCACCGCAGCG
CGACCGCCGCCGGCCCGGCCACGCGCCTGGTGCTGCCCGCGGGCAGCGCCGAAGAGGCGGCGCTGGTGCCGACGGCACAG
GTCTACCGCGCGCACCACCTGCTCGACGTGGTCGAGCGCTTCCTGCCCGAGCAGGCGGCCGAGGCCGGGCCGCCCGCCGC
CGACCGCTGGAGCCGCCTGGTGCCCACGGCCCTCGGAAAGGCGCCTGCGTACGCCGACCTCGCCGATGTGAAAGGCCAGG
CCGCGGCCAAGCGCGCGCTGGAAATCGCCGCCGCCGGCGGCCACAGCCTCCTGATGGTGGGGCCGCCAGGCTCGGGCAAG
TCCATGCTGGCCCAGCGCTTTGCCGGCCTGCTGCCGCCCATGGACACGACCGAAGCCCTGGAAGCGGCGGCGGTGGCCTC
GCTGGCGGGGCGCTTCACGCTGGACCGCTGGGGCCAGCGCCCCACCTGCGCACCGCACCACAGCGCCAGCGCGGTGGCCC
TGGTGGGCGGGGGCTCACCACCGCGCCCAGGTGAGATTTCCCTGGCCCACCATGGGGTGCTGTTTCTGGACGAGCTGCCG
GAGTTTCCCCGCAGCGCGCTGGAAGCCTTGCGCGAGCCGCTGGAGAGCGGGCACATCCGCATCTCGCGCGCGGCGGCGCA
AAGCGAGTTCCCGGCGCGCTTCCAGCTGATCGGCGCGATGAACCCATGCCCCTGCGGTTTTCTGGGCCATCCGACCAAAC
CCTGCCGCGACACACCCGACCAGGTGGCGCGTTACCAGGGCAAGCTCAGCGGGCCCTTGCTCGACCGCATCGACCTGCAC
GTGGAAGTGCCCGCCCTGCCCGCCCAGGAACTGCTGCGCGGCGGCATGAACGAGCCCAGTGCCGAGGTGCGTGCTCGCGT
GGTCGCGGCCCGCCAGCGCGCCCAGGACCGCCAGCACAGCGCCAACCAGGCGCTGGCCGGCCGGGCGCTTGAGCAACATG
TGAACGCCGAACCCGAAGCCCTGCAGTTTCTGCAAACAACGGCCGCTCGGCTCGGCTGGAGTGCGCGCAGCACGCACCGC
GCCCTGCGCGTGGCGCGCACCATCGCCGACCTGGCCGAAGCGCCGGCGGTGGGTGTGGGCCACCTGGCCGAAGCGGTGCA
GTACCGGCGCGTGCTGCGGCAGCCGGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(418-509)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(206-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.288

100

0.508
  comM Haemophilus influenzae Rd KW20

50.581

100

0.506
  comM Vibrio campbellii strain DS40M4

49.904

100

0.502
  comM Glaesserella parasuis strain SC1401

49.513

99.419

0.492
  comM Legionella pneumophila strain ERS1305867

48.842

100

0.49
  comM Legionella pneumophila str. Paris

48.842

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.875

100

0.417

Multiple sequence alignment