Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NLA_RS02415 Genome accession   NC_014752
Coordinates   432112..433608 (+) Length   498 a.a.
NCBI ID   WP_013448489.1    Uniprot ID   -
Organism   Neisseria lactamica 020-06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 427112..438608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS02405 (NLA_4530) putP 429771..431297 (-) 1527 WP_013448487.1 sodium/proline symporter PutP -
  NLA_RS02410 (NLA_4540) - 431778..432098 (+) 321 WP_013448488.1 accessory factor UbiK family protein -
  NLA_RS02415 (NLA_4550) comM 432112..433608 (+) 1497 WP_013448489.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NLA_RS02420 (NLA_4560) ftsN 433719..434588 (+) 870 WP_171007432.1 cell division protein FtsN -
  NLA_RS02425 (NLA_4570) dsbA1 434591..435235 (+) 645 WP_003709928.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NLA_RS02430 (NLA_4580) - 435269..436090 (+) 822 WP_003709929.1 undecaprenyl-diphosphate phosphatase -
  NLA_RS02450 (NLA_4590) - 437231..438379 (-) 1149 WP_013448490.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53452.40 Da        Isoelectric Point: 6.8995

>NTDB_id=39055 NLA_RS02415 WP_013448489.1 432112..433608(+) (comM) [Neisseria lactamica 020-06]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECSVPQMPSEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSANVLERVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLSGD
EEVGRSHVLKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=39055 NLA_RS02415 WP_013448489.1 432112..433608(+) (comM) [Neisseria lactamica 020-06]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGACTGCCCGATACGGAAGTCAAAGAAAGCCGCGACCGCGTCCGTGCCGCCATCA
TCCAAAGCGGCTTCGAGTTTCCCGCCAAAAAAATCACCGTCAATCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAGCTGGCGGAATACGAGTTTGC
CGGCGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTA
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGTTCCGTACCGCAAATGCCGTCTGAACA
TGGCGGACAACCTGATTTGTGTGATGTGAAAGGTCAGCACACTGCCCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTTTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTCGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCATCAACAGCAGCTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCGGACCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTGTTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCCTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAGCTTGTCGCCGCCATGAA
CCCGTGTCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGTTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AAATTTCCGGCCCGCTGCTTGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGTGCAAACGTTTTGGAACGCGTCATCGCCGCCCGCGACAAACAATACGCACGGCAGGGCAAAGT
GAATGCCGCCTTGAGCGTCAGCGAACTCGACACGTCCGCCCGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGCGGACTGT
TGGAAAAACTCTCCCTCTCCGCCCGCAGCTTCCACCGCATCATGCGCGTGGCGCGTACGCTGGCGGATCTGTCGGGCGAC
GAAGAAGTCGGCAGAAGCCATGTTTTGAAAGCCATAGGTTTCCGCCGCGCTTTATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

52.314

99.799

0.522
  comM Haemophilus influenzae Rd KW20

49.699

100

0.498
  comM Glaesserella parasuis strain SC1401

48.611

100

0.492
  comM Legionella pneumophila str. Paris

46.733

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.733

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

100

0.434

Multiple sequence alignment