Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   LPB220_RS02370 Genome accession   NZ_CP044230
Coordinates   437776..439761 (+) Length   661 a.a.
NCBI ID   WP_150905377.1    Uniprot ID   A0A5J6LK89
Organism   Streptococcus sp. LPB0220     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 432776..444761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS02350 (LPB220_02350) - 433180..434406 (+) 1227 WP_150905372.1 cysteine desulfurase -
  LPB220_RS02355 (LPB220_02355) sufU 434393..434827 (+) 435 WP_003010276.1 Fe-S cluster assembly sulfur transfer protein SufU -
  LPB220_RS02360 (LPB220_02360) sufB 434860..436272 (+) 1413 WP_150905374.1 Fe-S cluster assembly protein SufB -
  LPB220_RS02365 (LPB220_02365) - 436329..437570 (-) 1242 WP_150905375.1 serine hydrolase -
  LPB220_RS02370 (LPB220_02370) amiA3 437776..439761 (+) 1986 WP_150905377.1 peptide ABC transporter substrate-binding protein Regulator
  LPB220_RS02375 (LPB220_02375) amiC 439835..441334 (+) 1500 WP_150905379.1 ABC transporter permease Regulator
  LPB220_RS02380 (LPB220_02380) amiD 441334..442260 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  LPB220_RS02385 (LPB220_02385) amiE 442272..443339 (+) 1068 WP_150905381.1 ABC transporter ATP-binding protein Regulator
  LPB220_RS02390 (LPB220_02390) amiF 443350..444276 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72226.47 Da        Isoelectric Point: 5.8178

>NTDB_id=388971 LPB220_RS02370 WP_150905377.1 437776..439761(+) (amiA3) [Streptococcus sp. LPB0220]
MKKGKVFAVAGVTLLAAGLLAACSGSNTSKASSGEDKNYGYVYTDDPQTLDYTVSSKAATHDITTNVVDGLMANDKYGNL
VPSLAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAKDFVTGLKHAADKKSETLSLVQGSVKGLDDYVQGKTTDFS
QVGVKAVDDYTLQYTLNKPETFWNSKTTNGILFPISTEFLKSKGDDFGQPNDVKSILANGPFLLKSITSKSSVVFEKNDN
YWDKKNVHLKEVKLTYYDGSDQDSLARGFSDGAYTAARLFPASSNFATVSKKYKDNIYNTPAGSGVAVLGFNIDRQSYKH
TAKKSDAEKTATKKAILNKDFRQAITFALNRENYSAQVNSKAFAKPAIRNTYTAPAFVQVNGKDFGDVVADKLSTYGDQW
KGVNLADGQDGLYNKDKAKAQLEKAKAELQKDGVQFPIHIDVPVAQNSTNFVSRMQSLKQTVEDTLGKDNVVLDLQMMDS
DEVLNITLNVPSAADADWDLQGLVGWNPDYDDPSTYLDTLQPSSEDQTKVYLGFAGGVDNASAKAVGLDEYAKLLADANS
ESLDVAKRYEKYAAAQAWLSDSALVIPTMSSTGAATVVSKVVPFSGPSSQTGNKGSAYFKYVEVQDEPVTKKQYEQAREK
WQKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=388971 LPB220_RS02370 WP_150905377.1 437776..439761(+) (amiA3) [Streptococcus sp. LPB0220]
ATGAAAAAAGGTAAAGTATTCGCAGTTGCCGGAGTAACACTCCTTGCAGCTGGATTGTTGGCTGCATGTTCTGGTTCAAA
TACTAGTAAAGCAAGCTCAGGTGAAGACAAAAACTATGGTTATGTCTACACAGATGATCCTCAAACTTTGGACTACACTG
TATCTTCTAAAGCTGCTACACATGATATCACTACAAATGTCGTAGATGGTTTGATGGCAAATGACAAGTATGGAAATCTT
GTGCCATCACTTGCAGAAGATTGGTCTGTTTCAAAAGATGGTTTGACTTATACCTACAAGATTCGTAAGGGTGTTAAATG
GTACGATGCAGATGGTGAAGAACATGGTGAAGTGACTGCCAAAGACTTCGTAACTGGTTTGAAACACGCTGCTGATAAAA
AATCTGAAACCCTTTCACTTGTTCAAGGTTCTGTCAAAGGCTTGGATGATTATGTACAAGGAAAAACTACAGACTTTAGC
CAAGTTGGTGTCAAAGCTGTTGACGATTACACACTTCAATATACATTGAATAAACCTGAAACCTTCTGGAACTCTAAAAC
AACAAACGGAATCTTGTTCCCAATTAGCACAGAGTTCTTGAAGAGTAAGGGAGATGATTTTGGTCAACCAAACGATGTGA
AATCAATCCTTGCAAACGGACCTTTCCTTCTTAAATCAATCACTTCAAAATCATCTGTTGTATTTGAAAAGAATGACAAC
TACTGGGATAAGAAAAATGTTCACCTTAAAGAAGTGAAACTCACTTATTATGATGGATCAGACCAAGATTCATTGGCGCG
TGGTTTCTCTGATGGTGCTTATACAGCTGCTCGTCTTTTCCCGGCAAGTTCAAACTTTGCAACTGTATCTAAAAAATACA
AAGACAACATCTATAATACACCGGCTGGTTCAGGGGTAGCGGTTCTTGGTTTCAACATTGACCGTCAATCATACAAACAC
ACTGCTAAGAAATCAGATGCTGAAAAGACTGCGACTAAGAAAGCAATCTTGAACAAAGATTTCCGTCAAGCTATCACTTT
TGCCTTGAACCGTGAAAACTACTCAGCGCAAGTAAATAGTAAAGCATTTGCTAAACCAGCTATCCGTAATACCTACACAG
CTCCAGCCTTTGTGCAAGTAAATGGAAAAGACTTTGGAGATGTGGTTGCAGATAAATTGAGCACATATGGTGATCAATGG
AAAGGTGTCAACCTAGCAGATGGTCAAGATGGTCTTTATAACAAAGACAAAGCAAAAGCACAACTTGAAAAAGCAAAAGC
TGAACTTCAAAAAGATGGCGTTCAATTCCCAATTCATATTGACGTACCAGTAGCACAAAACTCTACAAACTTTGTTTCAC
GGATGCAATCATTGAAACAAACAGTGGAAGATACTCTTGGTAAAGACAATGTCGTTCTTGACCTTCAAATGATGGACTCA
GACGAAGTGTTGAACATCACATTGAATGTTCCATCAGCTGCAGATGCAGATTGGGATCTTCAAGGATTGGTTGGATGGAA
CCCAGACTATGATGATCCATCAACTTACCTTGATACTCTTCAACCATCATCAGAAGACCAAACAAAAGTCTACCTTGGTT
TTGCAGGTGGTGTAGATAATGCTTCAGCCAAAGCAGTTGGCTTGGATGAGTATGCAAAACTTCTTGCAGACGCTAATAGC
GAATCACTTGATGTAGCTAAACGTTATGAAAAATACGCAGCTGCTCAAGCTTGGTTGAGTGATAGTGCCTTGGTAATTCC
TACAATGTCAAGTACAGGTGCAGCAACTGTTGTTTCCAAAGTGGTACCATTCTCTGGCCCATCATCTCAAACAGGTAACA
AAGGATCAGCATACTTCAAATATGTTGAAGTTCAGGATGAACCTGTTACTAAGAAACAATACGAACAAGCACGTGAAAAA
TGGCAAAAAGAAAAAGCTGAGTCAAACAAAAAAGCTCAACAAGATCTTGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LK89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.789

100

0.601
  amiA Streptococcus salivarius strain HSISS4

59.668

100

0.598
  amiA3 Streptococcus thermophilus LMG 18311

59.337

100

0.596

Multiple sequence alignment