Detailed information NTG0388975

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: LPB220_RS02390
• Genome accession: NZ_CP044230
• Coordinates: 443350..444276 (+)
• Length: 308 a.a.
• NCBI ID: WP_003010296.1
• Uniprot ID: V8BAC4
• Organism: Streptococcus sp. LPB0220
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 438350..449276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPB220_RS02375 (LPB220_02375)	amiC	439835..441334 (+)	1500	WP_150905379.1	ABC transporter permease	Regulator
LPB220_RS02380 (LPB220_02380)	amiD	441334..442260 (+)	927	WP_003010290.1	oligopeptide ABC transporter permease OppC	Regulator
LPB220_RS02385 (LPB220_02385)	amiE	442272..443339 (+)	1068	WP_150905381.1	ABC transporter ATP-binding protein	Regulator
LPB220_RS02390 (LPB220_02390)	amiF	443350..444276 (+)	927	WP_003010296.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 35017.00 Da
• Isoelectric Point: 6.2915

>NTDB_id=388975 LPB220_RS02390 WP_003010296.1 443350..444276(+) (amiF) [Streptococcus sp. LPB0220]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGEIIYDGRKINGKNSHS
EKSELIRKIQMIFQDPAASLNERATVDYIISEGLINHHLFNSEEERQEKVKNIMHEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPEFVIADEPISALDVSVRAQVLNLLKKFQRELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
HPIHPYTQSLLSAVPIPDPILERKKVLKIYDPEQHDYSEDKPQMVEIKPGHYVWANKAEENKYRQEYK

Nucleotide

• Length: 927 bp

>NTDB_id=388975 LPB220_RS02390 WP_003010296.1 443350..444276(+) (amiF) [Streptococcus sp. LPB0220]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAAAAATTCGTTGCTGTAAAGAA
CGCCAACTTCTTCATTAATAAGGGAGAAACTTTCTCGCTTGTTGGTGAATCTGGAAGTGGGAAGACAACAATTGGACGTG
CGATCATCGGTCTGAATGATACAAGTGCTGGAGAAATTATTTATGACGGTCGCAAGATCAACGGAAAAAACTCTCATAGT
GAAAAATCAGAGTTGATCCGTAAAATTCAAATGATCTTCCAAGACCCAGCAGCAAGTTTGAATGAACGTGCAACAGTTGA
TTATATTATCTCTGAAGGTTTGATCAACCACCATTTGTTTAACAGTGAAGAAGAACGTCAGGAAAAAGTGAAAAATATTA
TGCATGAAGTTGGACTTCTTGCAGAACATTTGACACGTTACCCTCACGAATTCTCAGGTGGTCAACGTCAACGGATCGGT
ATTGCCCGTGCACTTGTCATGGAACCAGAATTTGTCATTGCGGATGAACCAATCTCAGCCCTTGACGTTTCAGTACGTGC
GCAAGTTTTGAACCTTTTGAAAAAATTCCAAAGAGAATTAGGCTTGACCTACCTCTTTATCGCCCATGACTTGTCAGTTG
TACGCTTCATTTCTGACCGTATTGCAGTTATCTATAAAGGGGTTATTGTAGAAGTGGCAGAAACTGAAGAGCTATTTAAC
CATCCAATCCATCCATACACCCAATCCCTACTTTCAGCGGTCCCAATTCCAGATCCAATTCTAGAACGTAAAAAAGTTCT
AAAAATCTACGATCCAGAACAACATGATTACTCTGAAGATAAACCACAAATGGTTGAAATTAAACCAGGTCATTATGTAT
GGGCTAACAAAGCTGAAGAAAACAAATACAGACAAGAATATAAATAG

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

3D structure

• AlphaFold DB: V8BAC4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus salivarius strain HSISS4	84.641	99.351	0.841
amiF	Streptococcus thermophilus LMG 18311	84.314	99.351	0.838
amiF	Streptococcus thermophilus LMD-9	83.987	99.351	0.834