Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LPB220_RS02385 Genome accession   NZ_CP044230
Coordinates   442272..443339 (+) Length   355 a.a.
NCBI ID   WP_150905381.1    Uniprot ID   A0A5J6LL10
Organism   Streptococcus sp. LPB0220     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 437272..448339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS02370 (LPB220_02370) amiA3 437776..439761 (+) 1986 WP_150905377.1 peptide ABC transporter substrate-binding protein Regulator
  LPB220_RS02375 (LPB220_02375) amiC 439835..441334 (+) 1500 WP_150905379.1 ABC transporter permease Regulator
  LPB220_RS02380 (LPB220_02380) amiD 441334..442260 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  LPB220_RS02385 (LPB220_02385) amiE 442272..443339 (+) 1068 WP_150905381.1 ABC transporter ATP-binding protein Regulator
  LPB220_RS02390 (LPB220_02390) amiF 443350..444276 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39470.10 Da        Isoelectric Point: 4.6877

>NTDB_id=388974 LPB220_RS02385 WP_150905381.1 442272..443339(+) (amiE) [Streptococcus sp. LPB0220]
MTSNNNIILSAQDIVVEFDVRDRVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAKGSIKYRGQEL
TDLKSNKDWENIRGSKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTAKEAKEMALDYMEKVGIPDAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYQFTVIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPKHPYTWSLLSSLPQLSTSDGDLYSIPGTPPSLYAPIKGDAFALRSDYAMQIDFEEEAPAFKVTDTHWAK
TWLLHPDAPTVHKPEVIENLHEKIGSKMGFTHITE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=388974 LPB220_RS02385 WP_150905381.1 442272..443339(+) (amiE) [Streptococcus sp. LPB0220]
ATGACATCAAATAACAATATTATTTTATCTGCTCAAGATATCGTAGTGGAATTTGACGTGCGCGATCGCGTGCTGACAGC
TATTCGTGGCGTATCGCTTGAGCTAGTAGAAGGTGAAGTTCTTGCCTTAGTTGGTGAGTCAGGTTCAGGGAAATCAGTTT
TGACAAAAACGTTCACTGGAATGTTAGAAGATAACGGCCGTATTGCCAAAGGTTCGATTAAATACCGTGGTCAAGAATTG
ACAGATTTAAAATCGAATAAAGATTGGGAAAATATTCGTGGATCTAAGATCGCTACAATTTTCCAAGACCCAATGACAAG
TTTGGACCCAATCAACACAATTGGATCACAAATTACAGAAGTCATTATCAAACACCAAGGGAAAACAGCTAAAGAAGCCA
AAGAAATGGCTTTGGACTATATGGAGAAAGTTGGAATTCCAGATGCTGAACGTCGTTTTGATGAGTATCCATTCCAATAT
TCAGGTGGGATGCGTCAACGGATCGTTATTGCCATCGCCTTAGCCTGCCGTCCAGATATCTTAATCTGTGACGAACCAAC
AACAGCCCTTGATGTAACCATTCAAGCGCAAATCATTGATTTGTTGAAATCCCTTCAAAAAGAATACCAATTTACAGTTA
TCTTTATCACCCACGACTTAGGTGTGGTTGCAAGTATTGCAGATAAAGTAGCCGTTATGTATGCTGGAGAAATTGTTGAG
TTTGGTAAAGTAGAAGAAATTTTCTATGATCCAAAACATCCATACACATGGAGCTTGCTTTCAAGCTTGCCTCAATTGTC
AACCTCAGATGGTGATCTTTACTCTATTCCAGGGACTCCGCCATCATTGTATGCTCCAATCAAAGGAGATGCCTTTGCAC
TTCGTTCAGACTATGCAATGCAGATTGATTTTGAAGAAGAGGCACCTGCTTTCAAAGTGACCGATACTCACTGGGCTAAG
ACTTGGTTGCTCCATCCAGATGCACCAACAGTTCATAAACCAGAAGTAATCGAAAACCTTCACGAAAAGATTGGCTCAAA
AATGGGCTTCACTCACATTACAGAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LL10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.286

99.437

0.828
  amiE Streptococcus thermophilus LMG 18311

82.436

99.437

0.82
  amiE Streptococcus thermophilus LMD-9

82.436

99.437

0.82
  oppD Streptococcus mutans UA159

57.391

97.183

0.558

Multiple sequence alignment