Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   LPB220_RS02380 Genome accession   NZ_CP044230
Coordinates   441334..442260 (+) Length   308 a.a.
NCBI ID   WP_003010290.1    Uniprot ID   A0AB39LCL1
Organism   Streptococcus sp. LPB0220     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 436334..447260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS02370 (LPB220_02370) amiA3 437776..439761 (+) 1986 WP_150905377.1 peptide ABC transporter substrate-binding protein Regulator
  LPB220_RS02375 (LPB220_02375) amiC 439835..441334 (+) 1500 WP_150905379.1 ABC transporter permease Regulator
  LPB220_RS02380 (LPB220_02380) amiD 441334..442260 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  LPB220_RS02385 (LPB220_02385) amiE 442272..443339 (+) 1068 WP_150905381.1 ABC transporter ATP-binding protein Regulator
  LPB220_RS02390 (LPB220_02390) amiF 443350..444276 (+) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34580.61 Da        Isoelectric Point: 9.8986

>NTDB_id=388973 LPB220_RS02380 WP_003010290.1 441334..442260(+) (amiD) [Streptococcus sp. LPB0220]
MATIDKNKFQFVKRDDFASEVIDAPAYSYWKSVFRQFLKKRTTIIMLAILIGILLMSFVYPMFSNFDYNDVSKVNDFSAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIIISFIATVINVVVGVIVGGIWGISKSIDRIMMEVYNVISNIPFMLIVIV
LTYSMGSGFWNLILAMSLTGWIGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTQTSQLLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLILVSLSFFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=388973 LPB220_RS02380 WP_003010290.1 441334..442260(+) (amiD) [Streptococcus sp. LPB0220]
ATGGCTACAATCGATAAAAATAAATTTCAGTTTGTAAAACGCGATGACTTTGCCTCTGAAGTAATCGATGCTCCAGCGTA
TTCATACTGGAAATCTGTATTTAGACAATTCTTGAAAAAAAGAACCACTATCATTATGCTTGCTATTTTGATTGGGATTC
TCTTGATGAGCTTTGTCTATCCTATGTTTTCAAATTTTGATTACAACGACGTAAGTAAGGTAAATGACTTTTCAGCACGT
TTGAATCCACCAAGTGCCAAAGCTTTCTTTGGTACAGATAATAACGGTAAATCCCTCTTTGATGGAGTTTGGTTTGGTGC
TCGGAATTCAATTATCATTTCTTTCATCGCCACTGTTATTAACGTGGTTGTCGGAGTCATCGTTGGTGGAATTTGGGGGA
TCTCAAAATCTATCGACCGTATCATGATGGAAGTTTATAACGTTATTTCAAACATTCCATTTATGTTGATCGTTATCGTC
TTGACTTACTCAATGGGATCTGGTTTCTGGAACTTGATTCTTGCCATGTCCTTAACAGGATGGATCGGAATTGCTTATAC
CATTCGTGTCCAAATTATGCGTTACCGTGATTTGGAGTACAACCTTGCCAGCCGAACATTAGGAACACCAACGTTGAAAA
TTGTTACGAAAAATATTTTGCCTCAATTGGTATCTGTTATCGTGACGCAAACATCACAGTTGCTTCCAAGCTTTATTTCT
TACGAAGCTTTCCTTTCCTTCTTCGGACTTGGTCTTCCAATCACAGTTCCAAGTTTGGGACGCTTGATTTCTGACTATTC
TCAAAACGTAACTACAAATGCCTACCTATTCTGGATTCCGCTTACTGTTTTGATTTTAGTATCCTTGTCATTCTTTATCG
TCGGACAAAACTTGGCCGATGCCAGCGACCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

79.545

100

0.795
  amiD Streptococcus thermophilus LMG 18311

78.247

100

0.782
  amiD Streptococcus thermophilus LMD-9

78.247

100

0.782

Multiple sequence alignment