Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   F4V27_RS00315 Genome accession   NZ_CP044167
Coordinates   63914..64645 (+) Length   243 a.a.
NCBI ID   WP_052777969.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0415     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 58914..69645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS00285 rpsF 59057..59434 (+) 378 WP_002858097.1 30S ribosomal protein S6 -
  F4V27_RS00290 ssb 59443..59994 (+) 552 WP_057100538.1 single-stranded DNA-binding protein -
  F4V27_RS00295 rpsR 60005..60265 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  F4V27_RS00300 lon 60325..62700 (-) 2376 WP_002868636.1 endopeptidase La -
  F4V27_RS00305 - 62717..63364 (-) 648 WP_002936691.1 outer membrane protein assembly factor BamD -
  F4V27_RS00310 fliW 63525..63914 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  F4V27_RS00315 proC 63914..64645 (+) 732 WP_052777969.1 pyrroline-5-carboxylate reductase Machinery gene
  F4V27_RS00320 ctsT 64642..64944 (+) 303 WP_002855822.1 transformation system protein Machinery gene
  F4V27_RS00325 - 64941..65603 (+) 663 WP_057100537.1 hypothetical protein -
  F4V27_RS00330 - 65600..66052 (+) 453 WP_002859148.1 hypothetical protein -
  F4V27_RS00335 hemD 66049..66678 (-) 630 WP_052833981.1 uroporphyrinogen-III synthase -
  F4V27_RS00340 thiE 66656..67288 (-) 633 WP_002856400.1 thiamine phosphate synthase -
  F4V27_RS00345 thiD 67278..68090 (-) 813 WP_002894307.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  F4V27_RS00350 - 68087..68773 (-) 687 WP_002894310.1 endonuclease III domain-containing protein -
  F4V27_RS00355 - 68770..69531 (-) 762 WP_057100536.1 ATP-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26620.07 Da        Isoelectric Point: 8.5934

>NTDB_id=388456 F4V27_RS00315 WP_052777969.1 63914..64645(+) (proC) [Campylobacter jejuni strain AR-0415]
MLYILANGAMATALAYGLKDDYEICIVGRSIEKLQALTKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSVLLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=388456 F4V27_RS00315 WP_052777969.1 63914..64645(+) (proC) [Campylobacter jejuni strain AR-0415]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCACCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTGGCTTTCAAACCTTATGCTTTAGAAAATATTGCCCAAATGCTAAAAGGACAAGCACGCATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATGCCTAATAC
AGCAGCTAAATATAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGTATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGTTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-85)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

98.765

100

0.988

Multiple sequence alignment