Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FOB62_RS07150 | Genome accession | NZ_CP044102 |
| Coordinates | 1402563..1403054 (+) | Length | 163 a.a. |
| NCBI ID | WP_014612571.1 | Uniprot ID | - |
| Organism | Streptococcus dysgalactiae strain FDAARGOS_654 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1397563..1408054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB62_RS07125 (FOB62_07130) | - | 1397752..1399071 (-) | 1320 | WP_014612574.1 | FAD-containing oxidoreductase | - |
| FOB62_RS07130 (FOB62_07135) | trxA | 1399298..1399612 (+) | 315 | WP_003052691.1 | thioredoxin | - |
| FOB62_RS07135 (FOB62_07140) | mutY | 1399663..1400829 (-) | 1167 | WP_014612573.1 | A/G-specific adenine glycosylase | - |
| FOB62_RS11665 (FOB62_07145) | - | 1400994..1401287 (+) | 294 | WP_014612572.1 | hypothetical protein | - |
| FOB62_RS07145 (FOB62_07150) | rpsF | 1402251..1402541 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| FOB62_RS07150 (FOB62_07155) | ssb | 1402563..1403054 (+) | 492 | WP_014612571.1 | single-stranded DNA-binding protein | Machinery gene |
| FOB62_RS07155 (FOB62_07160) | rpsR | 1403219..1403458 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| FOB62_RS07160 (FOB62_07165) | - | 1403591..1404250 (-) | 660 | WP_014612570.1 | DUF1129 domain-containing protein | - |
| FOB62_RS07165 (FOB62_07170) | - | 1404382..1405326 (-) | 945 | WP_003059456.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17951.73 Da Isoelectric Point: 4.8894
>NTDB_id=387885 FOB62_RS07150 WP_014612571.1 1402563..1403054(+) (ssb) [Streptococcus dysgalactiae strain FDAARGOS_654]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNGYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNGYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=387885 FOB62_RS07150 WP_014612571.1 1402563..1403054(+) (ssb) [Streptococcus dysgalactiae strain FDAARGOS_654]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACGGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACGGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.558 |
100 |
0.607 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssb | Glaesserella parasuis strain SC1401 |
32.961 |
100 |
0.362 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |