Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   HG697_RS01055 Genome accession   NZ_CP051623
Coordinates   166696..167088 (+) Length   130 a.a.
NCBI ID   WP_003058533.1    Uniprot ID   A0ABU0A9I6
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 161696..172088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG697_RS01025 (HG697_01030) - 163481..163909 (+) 429 WP_003058584.1 DUF1366 domain-containing protein -
  HG697_RS01030 (HG697_01035) - 163875..164102 (+) 228 WP_037588167.1 hypothetical protein -
  HG697_RS01035 (HG697_01040) - 164110..164577 (+) 468 WP_003058491.1 phage holin family protein -
  HG697_RS01040 (HG697_01045) - 164570..164905 (+) 336 WP_003058565.1 phage holin -
  HG697_RS01045 (HG697_01050) - 164907..166352 (+) 1446 WP_170078900.1 peptidoglycan amidohydrolase family protein -
  HG697_RS01050 (HG697_01055) prx 166490..166681 (+) 192 WP_003058494.1 hypothetical protein Regulator
  HG697_RS01055 (HG697_01060) comGD 166696..167088 (+) 393 WP_003058533.1 competence type IV pilus minor pilin ComGD Machinery gene
  HG697_RS01060 (HG697_01065) comGE 167096..167341 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  HG697_RS01065 (HG697_01070) comGF 167322..167762 (+) 441 WP_003058520.1 competence type IV pilus minor pilin ComGF Machinery gene
  HG697_RS01070 (HG697_01075) comGG 167785..168114 (+) 330 WP_003058539.1 competence type IV pilus minor pilin ComGG -
  HG697_RS01075 (HG697_01080) comGH 168177..169130 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  HG697_RS01080 (HG697_01085) - 169189..170385 (+) 1197 WP_015057203.1 acetate kinase -
  HG697_RS01085 (HG697_01090) - 170691..170897 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  HG697_RS01090 (HG697_01095) - 171000..171680 (+) 681 WP_012766451.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14980.12 Da        Isoelectric Point: 9.3948

>NTDB_id=385774 HG697_RS01055 WP_003058533.1 166696..167088(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19]
MLESLLTLSVTSFIVLGLSVPVTSSYRRAQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAAEESLTIPDLIRV
KNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 393 bp        

>NTDB_id=385774 HG697_RS01055 WP_003058533.1 166696..167088(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19]
TTGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGTCTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCG
AAGGGCTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTTATCGTCACCAACAAAAGTTGGCTATTTTGGAACATG
ATCAACGGGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCAGAGGAGTCGTTAACAATACCTGACTTGATAAGGGTT
AAGAATAGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCATTCTTTAGCAAAGATAATATTCGAGACGACTGATCA
ACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAAAAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

42.742

95.385

0.408
  comGD Streptococcus mutans UA159

42.742

95.385

0.408
  comGD Streptococcus gordonii str. Challis substr. CH1

42.742

95.385

0.408
  comGD/cglD Streptococcus mitis NCTC 12261

37.302

96.923

0.362