Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | F1537_RS06575 | Genome accession | NZ_CP043770 |
| Coordinates | 1277347..1277760 (-) | Length | 137 a.a. |
| NCBI ID | WP_013526476.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae biotype aegyptius strain HE7/F1946 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1272347..1282760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1537_RS06545 (F1537_06555) | - | 1272730..1273002 (-) | 273 | WP_013526482.1 | HU family DNA-binding protein | - |
| F1537_RS06550 (F1537_06560) | - | 1273142..1273732 (-) | 591 | WP_013526481.1 | YjaG family protein | - |
| F1537_RS06555 (F1537_06565) | nudC | 1273768..1274562 (-) | 795 | WP_013526480.1 | NAD(+) diphosphatase | - |
| F1537_RS06560 (F1537_06570) | nfuA | 1274629..1275225 (-) | 597 | WP_013526479.1 | Fe-S biogenesis protein NfuA | - |
| F1537_RS06565 (F1537_06575) | - | 1275301..1275987 (-) | 687 | WP_013526478.1 | ComF family protein | - |
| F1537_RS06570 (F1537_06580) | comE | 1276000..1277337 (-) | 1338 | WP_013526477.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| F1537_RS06575 (F1537_06585) | comD | 1277347..1277760 (-) | 414 | WP_013526476.1 | pilus assembly protein PilP | Machinery gene |
| F1537_RS06580 (F1537_06590) | comC | 1277757..1278278 (-) | 522 | WP_041174979.1 | competence protein ComC | Machinery gene |
| F1537_RS06585 (F1537_06595) | comB | 1278275..1278781 (-) | 507 | WP_013526474.1 | hypothetical protein | Machinery gene |
| F1537_RS06590 (F1537_06600) | comA | 1278782..1279579 (-) | 798 | WP_013526473.1 | pilus assembly protein PilM | Machinery gene |
| F1537_RS06595 (F1537_06605) | - | 1279678..1282278 (+) | 2601 | WP_013526472.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15643.75 Da Isoelectric Point: 4.4355
>NTDB_id=385777 F1537_RS06575 WP_013526476.1 1277347..1277760(-) (comD) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNVQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNVQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=385777 F1537_RS06575 WP_013526476.1 1277347..1277760(-) (comD) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTTGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGTACAAACCGTAATGGAACAGACTGAAATAATTTCCTCAGATGTCCCTAATAATCTAT
GCGGAGCTGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGGGAGCAATGTGATAGCAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTTGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGTACAAACCGTAATGGAACAGACTGAAATAATTTCCTCAGATGTCCCTAATAATCTAT
GCGGAGCTGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGGGAGCAATGTGATAGCAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
94.891 |
100 |
0.949 |
| comD | Haemophilus influenzae 86-028NP |
94.161 |
100 |
0.942 |