Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   F1537_RS06580 Genome accession   NZ_CP043770
Coordinates   1277757..1278278 (-) Length   173 a.a.
NCBI ID   WP_041174979.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE7/F1946     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1272757..1283278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1537_RS06550 (F1537_06560) - 1273142..1273732 (-) 591 WP_013526481.1 YjaG family protein -
  F1537_RS06555 (F1537_06565) nudC 1273768..1274562 (-) 795 WP_013526480.1 NAD(+) diphosphatase -
  F1537_RS06560 (F1537_06570) nfuA 1274629..1275225 (-) 597 WP_013526479.1 Fe-S biogenesis protein NfuA -
  F1537_RS06565 (F1537_06575) - 1275301..1275987 (-) 687 WP_013526478.1 ComF family protein -
  F1537_RS06570 (F1537_06580) comE 1276000..1277337 (-) 1338 WP_013526477.1 type IV pilus secretin PilQ family protein Machinery gene
  F1537_RS06575 (F1537_06585) comD 1277347..1277760 (-) 414 WP_013526476.1 pilus assembly protein PilP Machinery gene
  F1537_RS06580 (F1537_06590) comC 1277757..1278278 (-) 522 WP_041174979.1 competence protein ComC Machinery gene
  F1537_RS06585 (F1537_06595) comB 1278275..1278781 (-) 507 WP_013526474.1 hypothetical protein Machinery gene
  F1537_RS06590 (F1537_06600) comA 1278782..1279579 (-) 798 WP_013526473.1 pilus assembly protein PilM Machinery gene
  F1537_RS06595 (F1537_06605) - 1279678..1282278 (+) 2601 WP_013526472.1 penicillin-binding protein 1A -
  F1537_RS06600 (F1537_06610) - 1282351..1283196 (+) 846 WP_013526471.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20035.16 Da        Isoelectric Point: 8.4951

>NTDB_id=385778 F1537_RS06580 WP_041174979.1 1277757..1278278(-) (comC) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
MKDFFNDPFSPFGKWLSQPVYIQSLTFLLLLSAVIFRPVLDYIEASERFAETEYELAKKSSELLHQQKILTSLQQQSESR
KLSPELAAQIMPLNKQIQRLAARNGLSQHLRWEMGQQPILHLQLTGHFEKTKTFLTALLANTSQLSVSRLQFMKPEDSPL
QTEIIFQLEKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=385778 F1537_RS06580 WP_041174979.1 1277757..1278278(-) (comC) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
GTGAAAGATTTTTTTAACGATCCTTTTAGTCCTTTTGGCAAATGGCTAAGTCAGCCTGTTTATATACAGAGTTTAACCTT
TTTGTTGTTATTAAGTGCGGTGATTTTTCGCCCTGTTTTAGATTATATAGAGGCTAGTGAGCGTTTTGCTGAAACTGAAT
ATGAATTAGCAAAAAAAAGTTCGGAATTGCTACATCAACAGAAAATTTTAACCTCCTTACAACAACAATCGGAAAGCCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATGCCGTTGAATAAACAAATTCAACGTTTAGCTGCACGCAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAACAGCCTATTTTGCATTTACAGCTTACAGGGCATTTTGAAAAAACGAAGACAT
TTTTAACCGCACTTTTAGCTAATACGTCACAGCTTTCAGTAAGTCGGCTGCAATTTATGAAACCCGAAGACAGCCCATTG
CAAACCGAGATTATTTTTCAGCTAGAGAAGGAGACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae Rd KW20

89.017

100

0.89
  comC Haemophilus influenzae 86-028NP

89.017

100

0.89

Multiple sequence alignment