Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HG697_RS01455 Genome accession   NZ_CP051623
Coordinates   242455..243744 (-) Length   429 a.a.
NCBI ID   WP_003056985.1    Uniprot ID   A0ABU0A931
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 237455..248744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG697_RS10450 - 238310..238780 (-) 471 WP_240954822.1 hypothetical protein -
  HG697_RS01420 (HG697_01425) - 238777..239070 (-) 294 WP_012766496.1 hypothetical protein -
  HG697_RS01425 (HG697_01430) - 239133..239372 (-) 240 WP_012766497.1 hypothetical protein -
  HG697_RS01430 (HG697_01435) - 239516..240424 (+) 909 WP_012766498.1 ABC transporter ATP-binding protein -
  HG697_RS01435 (HG697_01440) - 240451..241251 (+) 801 WP_012766499.1 ABC transporter permease -
  HG697_RS01440 (HG697_01445) - 241297..242013 (+) 717 Protein_239 transposase -
  HG697_RS01455 (HG697_01460) rarA 242455..243744 (-) 1290 WP_003056985.1 replication-associated recombination protein A Machinery gene
  HG697_RS01460 (HG697_01465) - 243777..244343 (-) 567 WP_003056988.1 aminodeoxychorismate/anthranilate synthase component II -
  HG697_RS01465 (HG697_01470) pabB 244376..246133 (-) 1758 WP_152873387.1 aminodeoxychorismate synthase component I -
  HG697_RS01470 (HG697_01475) - 246334..246804 (+) 471 WP_136047636.1 DUF3013 family protein -
  HG697_RS01475 (HG697_01480) prmA 246875..247828 (+) 954 WP_152873385.1 50S ribosomal protein L11 methyltransferase -
  HG697_RS01480 (HG697_01485) - 247828..248586 (+) 759 WP_152873383.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47270.04 Da        Isoelectric Point: 7.3658

>NTDB_id=385780 HG697_RS01455 WP_003056985.1 242455..243744(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19]
MPDHLALRMRPKTISEVIGQEHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKRALR
TAITDKERGFAFDVMLDDNALDFIATATNGDLRSAYHSLDLAVMSTKPDSDGKRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLIVIAYEDIGLANPDAQVHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALSDLRTSGNLPIPRHLRDGHYAGSKELGNAKDYLYPHAYPKKWVKQQYLPDKLIGKQYFSP
NETGKYERALGANKERIDKLSSHSTGIPK

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=385780 HG697_RS01455 WP_003056985.1 242455..243744(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19]
ATGCCCGATCATTTAGCGCTCCGCATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAGAACATCTTGTTGGAGAAGG
TAAAATCATCCGTCGCATGGTGGAAGCCAATATGCTATCGTCCATGATTCTCTATGGTCCTCCAGGAATCGGTAAAACTT
CCATTGCTAGCGCTATTGCAGGTACCACCAAGTATGCCTTTCGGACCTTTAATGCCACCGTTGATAGCAAAAAACGTCTC
CAAGAAATTGCTGAGGAGGCCAAATTTTCAGGAGGATTGGTATTGCTACTAGACGAGATTCATCGGCTAGACAAAACCAA
ACAAGACTTCCTGCTCCCCTTACTGGAAAATGGTACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCAGCTATCAGAAGCAGGGTCCAGATTTTTGAACTGGAACCTCTCTCCAACGAGGATATCAAGCGTGCCCTTCGA
ACTGCCATTACCGATAAAGAAAGAGGCTTTGCCTTTGACGTGATGCTTGACGATAATGCTCTTGATTTTATCGCAACAGC
CACCAATGGCGATTTACGCTCAGCCTATCACTCCTTGGATCTAGCAGTCATGTCTACAAAGCCAGATAGCGATGGGAAGC
GACACATCACCTTAGACACTGTTGAAAATTCCTTGCAGCGCAGCTATATTACCATGGATAAAGATGGCGACGGGCATTAT
GATGTCCTATCTGCCCTCCAAAAAGCTATTCGTGGTTCCGATGTCAATGCCAGTCTTCACTATGCGGCACGATTAGTGGA
AGCAGGCGATTTACCAAGCCTAGCTAGGCGGTTGATTGTGATTGCTTATGAAGATATTGGTTTGGCTAATCCTGACGCCC
AAGTCCATACCGTTACCGCACTTGATGCCGCTCAGAAAATCGGCTTTCCAGAAGCACGTATTCTAATTGCTAACGTGGTC
ATTGATTTGGCCTTATCCCCAAAATCCAACTCAGCTTATCTGGCCATGGATGCTGCCTTAAGCGATTTGAGAACATCAGG
AAACCTTCCTATTCCAAGGCATTTGAGAGATGGGCATTATGCTGGCAGTAAAGAACTGGGGAATGCCAAAGATTACCTTT
ACCCCCACGCTTACCCTAAAAAATGGGTCAAACAACAGTACCTGCCAGATAAATTAATCGGTAAACAGTATTTTTCCCCA
AACGAAACAGGAAAATATGAACGCGCCCTGGGTGCCAACAAAGAGCGTATTGACAAGCTTTCTAGTCACTCAACCGGTAT
CCCAAAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.671

97.203

0.59

Multiple sequence alignment