Detailed information NTG0384799

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: FTN78_RS11550
• Genome accession: NZ_CP043523
• Coordinates: 2243723..2244169 (+)
• Length: 148 a.a.
• NCBI ID: WP_031296844.1
• Uniprot ID: A0AAC9R3D6
• Organism: Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2238723..2249169

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FTN78_RS11525 (FTN78_chr2308)	comGA	2240799..2241737 (+)	939	WP_010906320.1	competence type IV pilus ATPase ComGA	Machinery gene
FTN78_RS11530 (FTN78_chr2309)	comGB	2241631..2242704 (+)	1074	WP_010906319.1	competence type IV pilus assembly protein ComGB	Machinery gene
FTN78_RS11535 (FTN78_chr2310)	comGC	2242832..2243101 (+)	270	WP_023349160.1	competence type IV pilus major pilin ComGC	Machinery gene
FTN78_RS11540 (FTN78_chr2311)	comGD	2243076..2243492 (+)	417	WP_021216554.1	competence type IV pilus minor pilin ComGD	Machinery gene
FTN78_RS11545 (FTN78_chr2312)	comGE	2243464..2243760 (+)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
FTN78_RS11550 (FTN78_chr2313)	comGF	2243723..2244169 (+)	447	WP_031296844.1	competence type IV pilus minor pilin ComGF	Machinery gene
FTN78_RS11555 (FTN78_chr2314)	comGG	2244208..2244492 (+)	285	WP_010906314.1	competence type IV pilus minor pilin ComGG	Machinery gene
FTN78_RS11560 (FTN78_chr2315)	-	2244573..2245010 (+)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
FTN78_RS11565 (FTN78_chr2316)	-	2245007..2245849 (+)	843	WP_010906312.1	metal ABC transporter substrate-binding protein	-
FTN78_RS11570 (FTN78_chr2317)	-	2246026..2246763 (+)	738	WP_010906311.1	metal ABC transporter ATP-binding protein	-
FTN78_RS11575 (FTN78_chr2318)	-	2246756..2247565 (+)	810	WP_010906310.1	metal ABC transporter permease	-
FTN78_RS11580 (FTN78_chr2319)	-	2247604..2248470 (-)	867	WP_010906309.1	RluA family pseudouridine synthase	-
FTN78_RS11585 (FTN78_chr2320)	-	2248675..2249052 (+)	378	WP_003129983.1	pyridoxamine 5'-phosphate oxidase family protein	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17083.85 Da
• Isoelectric Point: 8.6780

>NTDB_id=384799 FTN78_RS11550 WP_031296844.1 2243723..2244169(+) (comGF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MERKLCDLNFKVKAFTLLECLVALLAISGSALVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 447 bp

>NTDB_id=384799 FTN78_RS11550 WP_031296844.1 2243723..2244169(+) (comGF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGCCCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGATACGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	75.54	93.919	0.709
comYF	Streptococcus mutans UA140	47.518	95.27	0.453
comYF	Streptococcus mutans UA159	46.809	95.27	0.446
comGF/cglF	Streptococcus mitis SK321	43.066	92.568	0.399
comGF/cglF	Streptococcus pneumoniae Rx1	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae D39	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae R6	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae TIGR4	40.426	95.27	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	41.606	92.568	0.385