Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FTN78_RS11540 Genome accession   NZ_CP043523
Coordinates   2243076..2243492 (+) Length   138 a.a.
NCBI ID   WP_021216554.1    Uniprot ID   A0AAC9R430
Organism   Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2238076..2248492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTN78_RS11525 (FTN78_chr2308) comGA 2240799..2241737 (+) 939 WP_010906320.1 competence type IV pilus ATPase ComGA Machinery gene
  FTN78_RS11530 (FTN78_chr2309) comGB 2241631..2242704 (+) 1074 WP_010906319.1 competence type IV pilus assembly protein ComGB Machinery gene
  FTN78_RS11535 (FTN78_chr2310) comGC 2242832..2243101 (+) 270 WP_023349160.1 competence type IV pilus major pilin ComGC Machinery gene
  FTN78_RS11540 (FTN78_chr2311) comGD 2243076..2243492 (+) 417 WP_021216554.1 competence type IV pilus minor pilin ComGD Machinery gene
  FTN78_RS11545 (FTN78_chr2312) comGE 2243464..2243760 (+) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  FTN78_RS11550 (FTN78_chr2313) comGF 2243723..2244169 (+) 447 WP_031296844.1 competence type IV pilus minor pilin ComGF Machinery gene
  FTN78_RS11555 (FTN78_chr2314) comGG 2244208..2244492 (+) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  FTN78_RS11560 (FTN78_chr2315) - 2244573..2245010 (+) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  FTN78_RS11565 (FTN78_chr2316) - 2245007..2245849 (+) 843 WP_010906312.1 metal ABC transporter substrate-binding protein -
  FTN78_RS11570 (FTN78_chr2317) - 2246026..2246763 (+) 738 WP_010906311.1 metal ABC transporter ATP-binding protein -
  FTN78_RS11575 (FTN78_chr2318) - 2246756..2247565 (+) 810 WP_010906310.1 metal ABC transporter permease -
  FTN78_RS11580 (FTN78_chr2319) - 2247604..2248470 (-) 867 WP_010906309.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15902.69 Da        Isoelectric Point: 7.9826

>NTDB_id=384797 FTN78_RS11540 WP_021216554.1 2243076..2243492(+) (comGD) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MKNEILMTKAFTLLESLLVLLIISFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICE
DRSITIPKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=384797 FTN78_RS11540 WP_021216554.1 2243076..2243492(+) (comGD) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGAAGAACGAAATTTTAATGACTAAAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTATTTCTTTTATCAC
AACTCTTTTTTCTTTAGAAATAATACAAACAATCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCT
ATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAA
GATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAG
CTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTA
AAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

65.942

100

0.659
  comYD Streptococcus gordonii str. Challis substr. CH1

40.458

94.928

0.384
  comYD Streptococcus mutans UA140

40.625

92.754

0.377
  comYD Streptococcus mutans UA159

40.625

92.754

0.377

Multiple sequence alignment