Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | FTN78_RS11545 | Genome accession | NZ_CP043523 |
| Coordinates | 2243464..2243760 (+) | Length | 98 a.a. |
| NCBI ID | WP_010906316.1 | Uniprot ID | A0A3N6L9Y1 |
| Organism | Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2238464..2248760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FTN78_RS11525 (FTN78_chr2308) | comGA | 2240799..2241737 (+) | 939 | WP_010906320.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FTN78_RS11530 (FTN78_chr2309) | comGB | 2241631..2242704 (+) | 1074 | WP_010906319.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| FTN78_RS11535 (FTN78_chr2310) | comGC | 2242832..2243101 (+) | 270 | WP_023349160.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FTN78_RS11540 (FTN78_chr2311) | comGD | 2243076..2243492 (+) | 417 | WP_021216554.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| FTN78_RS11545 (FTN78_chr2312) | comGE | 2243464..2243760 (+) | 297 | WP_010906316.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| FTN78_RS11550 (FTN78_chr2313) | comGF | 2243723..2244169 (+) | 447 | WP_031296844.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| FTN78_RS11555 (FTN78_chr2314) | comGG | 2244208..2244492 (+) | 285 | WP_010906314.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| FTN78_RS11560 (FTN78_chr2315) | - | 2244573..2245010 (+) | 438 | WP_010906313.1 | zinc-dependent MarR family transcriptional regulator | - |
| FTN78_RS11565 (FTN78_chr2316) | - | 2245007..2245849 (+) | 843 | WP_010906312.1 | metal ABC transporter substrate-binding protein | - |
| FTN78_RS11570 (FTN78_chr2317) | - | 2246026..2246763 (+) | 738 | WP_010906311.1 | metal ABC transporter ATP-binding protein | - |
| FTN78_RS11575 (FTN78_chr2318) | - | 2246756..2247565 (+) | 810 | WP_010906310.1 | metal ABC transporter permease | - |
| FTN78_RS11580 (FTN78_chr2319) | - | 2247604..2248470 (-) | 867 | WP_010906309.1 | RluA family pseudouridine synthase | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 11076.95 Da Isoelectric Point: 6.4684
>NTDB_id=384798 FTN78_RS11545 WP_010906316.1 2243464..2243760(+) (comGE) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS
Nucleotide
Download Length: 297 bp
>NTDB_id=384798 FTN78_RS11545 WP_010906316.1 2243464..2243760(+) (comGE) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Lactococcus lactis subsp. cremoris KW2 |
68.041 |
98.98 |
0.673 |