Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FTN78_RS11535 Genome accession   NZ_CP043523
Coordinates   2242832..2243101 (+) Length   89 a.a.
NCBI ID   WP_023349160.1    Uniprot ID   A0AB35KDE0
Organism   Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2237832..2248101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTN78_RS11525 (FTN78_chr2308) comGA 2240799..2241737 (+) 939 WP_010906320.1 competence type IV pilus ATPase ComGA Machinery gene
  FTN78_RS11530 (FTN78_chr2309) comGB 2241631..2242704 (+) 1074 WP_010906319.1 competence type IV pilus assembly protein ComGB Machinery gene
  FTN78_RS11535 (FTN78_chr2310) comGC 2242832..2243101 (+) 270 WP_023349160.1 competence type IV pilus major pilin ComGC Machinery gene
  FTN78_RS11540 (FTN78_chr2311) comGD 2243076..2243492 (+) 417 WP_021216554.1 competence type IV pilus minor pilin ComGD Machinery gene
  FTN78_RS11545 (FTN78_chr2312) comGE 2243464..2243760 (+) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  FTN78_RS11550 (FTN78_chr2313) comGF 2243723..2244169 (+) 447 WP_031296844.1 competence type IV pilus minor pilin ComGF Machinery gene
  FTN78_RS11555 (FTN78_chr2314) comGG 2244208..2244492 (+) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  FTN78_RS11560 (FTN78_chr2315) - 2244573..2245010 (+) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  FTN78_RS11565 (FTN78_chr2316) - 2245007..2245849 (+) 843 WP_010906312.1 metal ABC transporter substrate-binding protein -
  FTN78_RS11570 (FTN78_chr2317) - 2246026..2246763 (+) 738 WP_010906311.1 metal ABC transporter ATP-binding protein -
  FTN78_RS11575 (FTN78_chr2318) - 2246756..2247565 (+) 810 WP_010906310.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10113.52 Da        Isoelectric Point: 4.2950

>NTDB_id=384796 FTN78_RS11535 WP_023349160.1 2242832..2243101(+) (comGC) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPSLSELLSAGMITQKQISAYDNYYDQN
KNEERNFND

Nucleotide


Download         Length: 270 bp        

>NTDB_id=384796 FTN78_RS11535 WP_023349160.1 2242832..2243101(+) (comGC) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCA
AAAAACTGGAGAAGCGGCAGTTGTCAAAGTAGTAGAAAGTCAAGCTCAACTTTATGAATTAGATCATGATGATGAGAAGC
CGAGTCTGTCAGAATTGCTCAGTGCAGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAAT
AAAAATGAAGAACGAAATTTTAATGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

88

84.27

0.742
  comYC Streptococcus gordonii str. Challis substr. CH1

57.647

95.506

0.551
  comGC/cglC Streptococcus pneumoniae Rx1

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae D39

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae R6

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae TIGR4

55.056

100

0.551
  comYC Streptococcus suis isolate S10

58.904

82.022

0.483
  comGC/cglC Streptococcus mitis SK321

55.263

85.393

0.472
  comYC Streptococcus mutans UA140

52.055

82.022

0.427
  comYC Streptococcus mutans UA159

52.055

82.022

0.427
  comGC/cglC Streptococcus mitis NCTC 12261

57.812

71.91

0.416

Multiple sequence alignment