Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FYK34_RS19200 | Genome accession | NZ_CP043473 |
| Coordinates | 4048404..4048907 (+) | Length | 167 a.a. |
| NCBI ID | WP_149299320.1 | Uniprot ID | - |
| Organism | Chromobacterium paludis strain IIBBL 257-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4043404..4053907
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK34_RS19185 (FYK34_19185) | proB | 4043984..4045102 (-) | 1119 | WP_149299314.1 | glutamate 5-kinase | - |
| FYK34_RS19190 (FYK34_19190) | - | 4045178..4046710 (-) | 1533 | WP_149299316.1 | hypothetical protein | - |
| FYK34_RS19195 (FYK34_19195) | - | 4046772..4048121 (-) | 1350 | WP_149299318.1 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
| FYK34_RS19200 (FYK34_19200) | pilA | 4048404..4048907 (+) | 504 | WP_149299320.1 | pilin | Machinery gene |
| FYK34_RS19205 (FYK34_19205) | - | 4048975..4050810 (+) | 1836 | WP_149299322.1 | PglL family O-oligosaccharyltransferase | - |
| FYK34_RS19210 (FYK34_19210) | - | 4050856..4052679 (+) | 1824 | WP_231137317.1 | PglL family O-oligosaccharyltransferase | - |
| FYK34_RS19215 (FYK34_19215) | rpoH | 4052740..4053603 (-) | 864 | WP_149299324.1 | RNA polymerase sigma factor RpoH | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 17109.57 Da Isoelectric Point: 7.7759
>NTDB_id=384402 FYK34_RS19200 WP_149299320.1 4048404..4048907(+) (pilA) [Chromobacterium paludis strain IIBBL 257-1]
MKKQMQQGFTLIELMIVVAIIGILAAVAIPAYQNYTVRARVTEGLSLADTAKLAVAENAASGVKYSNGWNAPTATKNVST
VGITDSTGVITITYQANVAASNANTLVLIPYTVASGGTDVALPDSTASFTPPSSNIVWQCASAGTATLKVGSVKGTLDSS
LVPAECR
MKKQMQQGFTLIELMIVVAIIGILAAVAIPAYQNYTVRARVTEGLSLADTAKLAVAENAASGVKYSNGWNAPTATKNVST
VGITDSTGVITITYQANVAASNANTLVLIPYTVASGGTDVALPDSTASFTPPSSNIVWQCASAGTATLKVGSVKGTLDSS
LVPAECR
Nucleotide
Download Length: 504 bp
>NTDB_id=384402 FYK34_RS19200 WP_149299320.1 4048404..4048907(+) (pilA) [Chromobacterium paludis strain IIBBL 257-1]
ATGAAGAAACAAATGCAACAGGGTTTCACCCTGATCGAACTGATGATCGTGGTGGCGATTATCGGCATTCTGGCGGCGGT
AGCCATCCCCGCTTATCAGAACTACACCGTGCGCGCACGCGTGACGGAAGGTTTGTCGCTGGCTGACACCGCTAAACTGG
CAGTGGCTGAGAATGCGGCGAGCGGGGTGAAATATTCCAATGGTTGGAATGCTCCGACGGCGACTAAGAATGTTTCTACC
GTTGGCATTACGGATTCAACTGGTGTTATTACCATTACGTATCAGGCCAACGTTGCCGCGTCTAATGCCAATACTCTGGT
TCTGATTCCGTATACTGTTGCAAGTGGCGGAACTGACGTAGCATTGCCTGACAGCACTGCTTCTTTCACTCCGCCGTCCA
GTAACATTGTTTGGCAGTGTGCGTCTGCTGGTACCGCTACACTTAAAGTGGGTTCTGTTAAAGGCACCTTGGATTCCAGC
CTGGTTCCTGCAGAATGTCGCTAA
ATGAAGAAACAAATGCAACAGGGTTTCACCCTGATCGAACTGATGATCGTGGTGGCGATTATCGGCATTCTGGCGGCGGT
AGCCATCCCCGCTTATCAGAACTACACCGTGCGCGCACGCGTGACGGAAGGTTTGTCGCTGGCTGACACCGCTAAACTGG
CAGTGGCTGAGAATGCGGCGAGCGGGGTGAAATATTCCAATGGTTGGAATGCTCCGACGGCGACTAAGAATGTTTCTACC
GTTGGCATTACGGATTCAACTGGTGTTATTACCATTACGTATCAGGCCAACGTTGCCGCGTCTAATGCCAATACTCTGGT
TCTGATTCCGTATACTGTTGCAAGTGGCGGAACTGACGTAGCATTGCCTGACAGCACTGCTTCTTTCACTCCGCCGTCCA
GTAACATTGTTTGGCAGTGTGCGTCTGCTGGTACCGCTACACTTAAAGTGGGTTCTGTTAAAGGCACCTTGGATTCCAGC
CTGGTTCCTGCAGAATGTCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
48.864 |
100 |
0.515 |
| pilA2 | Legionella pneumophila str. Paris |
46.108 |
100 |
0.461 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
45.509 |
100 |
0.455 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.859 |
100 |
0.425 |
| comP | Acinetobacter baylyi ADP1 |
39.024 |
98.204 |
0.383 |