Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | FYK34_RS17630 | Genome accession | NZ_CP043473 |
| Coordinates | 3718478..3719614 (-) | Length | 378 a.a. |
| NCBI ID | WP_149298730.1 | Uniprot ID | A0A5C1DKZ2 |
| Organism | Chromobacterium paludis strain IIBBL 257-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3713478..3724614
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK34_RS17610 (FYK34_17610) | - | 3713830..3714615 (+) | 786 | WP_149298721.1 | TIGR00266 family protein | - |
| FYK34_RS17615 (FYK34_17615) | thpR | 3714617..3715159 (-) | 543 | WP_149298723.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| FYK34_RS17620 (FYK34_17620) | - | 3715149..3716762 (-) | 1614 | WP_149298725.1 | response regulator | - |
| FYK34_RS17625 (FYK34_17625) | - | 3716839..3718452 (-) | 1614 | WP_149298728.1 | response regulator | - |
| FYK34_RS17630 (FYK34_17630) | pilU | 3718478..3719614 (-) | 1137 | WP_149298730.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| FYK34_RS17635 (FYK34_17635) | pilT | 3719706..3720743 (-) | 1038 | WP_149298732.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| FYK34_RS17640 (FYK34_17640) | - | 3720993..3721688 (+) | 696 | WP_149298734.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| FYK34_RS17645 (FYK34_17645) | proC | 3721742..3722545 (+) | 804 | WP_149298736.1 | pyrroline-5-carboxylate reductase | - |
| FYK34_RS17650 (FYK34_17650) | - | 3722555..3723139 (+) | 585 | WP_149298738.1 | YggT family protein | - |
| FYK34_RS17655 (FYK34_17655) | - | 3723217..3723522 (+) | 306 | WP_149298740.1 | c-type cytochrome | - |
| FYK34_RS17660 (FYK34_17660) | dksA | 3723808..3724218 (+) | 411 | WP_043627703.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42408.54 Da Isoelectric Point: 6.1904
>NTDB_id=384397 FYK34_RS17630 WP_149298730.1 3718478..3719614(-) (pilU) [Chromobacterium paludis strain IIBBL 257-1]
MEKDQASKFIHDLLKHAIGKNASDIFISPEFPPAMKIDGKITPVAPQPLSPQQSKALVRSVMNDRQTEEFESKKEANFAI
NPPGIGRFRVSAFVQQGMVGMVLRKINTEIPNFDQLNLPEVLKDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSTNQD
HIITVEDPIEYVHAHKKSIVTQREIGVDTESWEIALKNTLRQAPDVILMGEIRDRETMNYGLQFAETGHLCLATMHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRSIVSQRLVPHKSGRGRVAAVEILLNSPLVSDMIFRGEIAGLKEVMSRSREAG
MQTFDQSLFELYEADLVSYEDALRNADSINDLRLKIKLYSESARNRDPLEGIDHLDIV
MEKDQASKFIHDLLKHAIGKNASDIFISPEFPPAMKIDGKITPVAPQPLSPQQSKALVRSVMNDRQTEEFESKKEANFAI
NPPGIGRFRVSAFVQQGMVGMVLRKINTEIPNFDQLNLPEVLKDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSTNQD
HIITVEDPIEYVHAHKKSIVTQREIGVDTESWEIALKNTLRQAPDVILMGEIRDRETMNYGLQFAETGHLCLATMHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRSIVSQRLVPHKSGRGRVAAVEILLNSPLVSDMIFRGEIAGLKEVMSRSREAG
MQTFDQSLFELYEADLVSYEDALRNADSINDLRLKIKLYSESARNRDPLEGIDHLDIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=384397 FYK34_RS17630 WP_149298730.1 3718478..3719614(-) (pilU) [Chromobacterium paludis strain IIBBL 257-1]
ATGGAAAAGGACCAGGCTTCAAAATTCATTCACGATCTGCTGAAGCACGCGATCGGCAAGAACGCCTCGGACATCTTCAT
CTCGCCGGAATTTCCGCCGGCGATGAAGATAGACGGCAAGATCACGCCGGTGGCGCCGCAGCCCTTGAGCCCGCAGCAGA
GCAAGGCGCTGGTGCGCTCGGTGATGAACGACCGCCAGACCGAAGAATTCGAATCCAAAAAAGAAGCCAACTTCGCCATC
AACCCGCCCGGCATCGGCCGCTTCCGCGTCAGCGCCTTCGTGCAGCAGGGCATGGTGGGCATGGTGCTGCGCAAGATCAA
CACCGAGATCCCCAACTTCGACCAGCTCAATCTGCCCGAGGTCTTGAAGGACATCGCGCTGATCAAGCGCGGTCTGGTGA
TCTTCGTCGGCGGCACCGGCTCAGGCAAATCCACCTCGCTGGCCGCGCTGGTGGACTGGCGCAACAGCACCAACCAGGAC
CACATCATCACGGTGGAGGATCCGATCGAGTACGTGCACGCGCACAAGAAATCCATCGTCACCCAGCGCGAGATCGGCGT
CGACACCGAGAGCTGGGAAATCGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGCGAGATCCGCG
ACCGCGAAACCATGAACTACGGCCTGCAGTTCGCCGAGACCGGCCACCTGTGCCTGGCCACCATGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCCTCAATTTCTTCCCGGAGGAGCGCCACCAGCAGGTGCTGATGGACTTGTCGCTGAACAT
GCGCTCCATCGTGTCGCAACGGCTGGTGCCGCATAAATCCGGCCGCGGCCGCGTGGCGGCGGTGGAAATTTTGCTGAACA
GCCCCCTGGTCTCGGATATGATCTTCCGCGGCGAGATCGCCGGCCTGAAAGAAGTGATGTCGCGCTCGCGCGAGGCCGGC
ATGCAGACTTTCGACCAATCGCTGTTCGAATTGTACGAGGCGGACCTGGTCAGCTACGAGGACGCGCTGCGCAACGCGGA
CTCCATCAACGACCTGCGCCTGAAAATCAAGCTGTACAGCGAAAGCGCGCGCAATCGCGACCCGCTGGAAGGCATAGACC
ACCTGGACATTGTTTGA
ATGGAAAAGGACCAGGCTTCAAAATTCATTCACGATCTGCTGAAGCACGCGATCGGCAAGAACGCCTCGGACATCTTCAT
CTCGCCGGAATTTCCGCCGGCGATGAAGATAGACGGCAAGATCACGCCGGTGGCGCCGCAGCCCTTGAGCCCGCAGCAGA
GCAAGGCGCTGGTGCGCTCGGTGATGAACGACCGCCAGACCGAAGAATTCGAATCCAAAAAAGAAGCCAACTTCGCCATC
AACCCGCCCGGCATCGGCCGCTTCCGCGTCAGCGCCTTCGTGCAGCAGGGCATGGTGGGCATGGTGCTGCGCAAGATCAA
CACCGAGATCCCCAACTTCGACCAGCTCAATCTGCCCGAGGTCTTGAAGGACATCGCGCTGATCAAGCGCGGTCTGGTGA
TCTTCGTCGGCGGCACCGGCTCAGGCAAATCCACCTCGCTGGCCGCGCTGGTGGACTGGCGCAACAGCACCAACCAGGAC
CACATCATCACGGTGGAGGATCCGATCGAGTACGTGCACGCGCACAAGAAATCCATCGTCACCCAGCGCGAGATCGGCGT
CGACACCGAGAGCTGGGAAATCGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGCGAGATCCGCG
ACCGCGAAACCATGAACTACGGCCTGCAGTTCGCCGAGACCGGCCACCTGTGCCTGGCCACCATGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCCTCAATTTCTTCCCGGAGGAGCGCCACCAGCAGGTGCTGATGGACTTGTCGCTGAACAT
GCGCTCCATCGTGTCGCAACGGCTGGTGCCGCATAAATCCGGCCGCGGCCGCGTGGCGGCGGTGGAAATTTTGCTGAACA
GCCCCCTGGTCTCGGATATGATCTTCCGCGGCGAGATCGCCGGCCTGAAAGAAGTGATGTCGCGCTCGCGCGAGGCCGGC
ATGCAGACTTTCGACCAATCGCTGTTCGAATTGTACGAGGCGGACCTGGTCAGCTACGAGGACGCGCTGCGCAACGCGGA
CTCCATCAACGACCTGCGCCTGAAAATCAAGCTGTACAGCGAAAGCGCGCGCAATCGCGACCCGCTGGAAGGCATAGACC
ACCTGGACATTGTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
59.714 |
92.593 |
0.553 |
| pilU | Acinetobacter baylyi ADP1 |
54.645 |
96.825 |
0.529 |
| pilU | Vibrio cholerae strain A1552 |
53.276 |
92.857 |
0.495 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.62 |
89.153 |
0.389 |
| pilT | Pseudomonas aeruginosa PAK |
40.653 |
89.153 |
0.362 |