Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CYAN7822_RS16720 Genome accession   NC_014501
Coordinates   3789260..3789631 (-) Length   123 a.a.
NCBI ID   WP_013323443.1    Uniprot ID   E0UEC8
Organism   Gloeothece verrucosa PCC 7822     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3784260..3794631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN7822_RS16705 (Cyan7822_3422) - 3784477..3785271 (-) 795 WP_013323440.1 MlaE family lipid ABC transporter permease subunit -
  CYAN7822_RS16710 (Cyan7822_3423) pilJ 3785723..3788596 (-) 2874 WP_013323441.1 methyl-accepting chemotaxis protein Machinery gene
  CYAN7822_RS16715 (Cyan7822_3424) - 3788679..3789209 (-) 531 WP_013323442.1 chemotaxis protein CheW -
  CYAN7822_RS16720 (Cyan7822_3425) pilH 3789260..3789631 (-) 372 WP_013323443.1 response regulator Machinery gene
  CYAN7822_RS16725 (Cyan7822_3426) - 3789892..3791112 (-) 1221 WP_245602587.1 response regulator -
  CYAN7822_RS16730 (Cyan7822_3427) hmpF 3791477..3793084 (+) 1608 WP_013323445.1 pilus motility taxis protein HmpF -
  CYAN7822_RS16735 (Cyan7822_3428) tilS 3793172..3794140 (-) 969 WP_013323446.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 14033.26 Da        Isoelectric Point: 4.7581

>NTDB_id=38387 CYAN7822_RS16720 WP_013323443.1 3789260..3789631(-) (pilH) [Gloeothece verrucosa PCC 7822]
MREVLLVEDSQVQREMISNLLRDYGLNVSIACDGVEALEFIETFNPDLVVLDIVMPRMNGYEVCRRLKSDPKTKHLPVVL
CSSKGEEFDRYWGMKQGADAYIAKPFQPVELLGTIKQLLRGEN

Nucleotide


Download         Length: 372 bp        

>NTDB_id=38387 CYAN7822_RS16720 WP_013323443.1 3789260..3789631(-) (pilH) [Gloeothece verrucosa PCC 7822]
ATGAGGGAAGTTTTGCTAGTAGAAGACAGTCAAGTTCAACGGGAGATGATTTCAAACCTATTACGGGACTATGGTTTGAA
TGTATCAATAGCCTGTGACGGGGTTGAAGCATTAGAGTTTATTGAAACATTTAACCCAGATCTGGTGGTTTTGGATATTG
TCATGCCTCGCATGAATGGTTATGAAGTCTGTCGCCGTTTAAAATCCGATCCCAAGACGAAGCACTTACCGGTGGTTTTA
TGTTCTTCTAAAGGAGAAGAATTTGATCGTTACTGGGGGATGAAACAAGGGGCTGATGCTTATATTGCCAAACCTTTTCA
GCCAGTGGAGTTGCTCGGCACTATTAAACAATTATTAAGAGGTGAAAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0UEC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

79.167

97.561

0.772
  pilG Acinetobacter baumannii strain A118

40

93.496

0.374
  chpA Acinetobacter baumannii strain A118

38.983

95.935

0.374
  vicR Streptococcus mutans UA159

38.333

97.561

0.374
  pilL-C Synechocystis sp. PCC 6803

37.5

97.561

0.366

Multiple sequence alignment