Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   CYAN7822_RS16710 Genome accession   NC_014501
Coordinates   3785723..3788596 (-) Length   957 a.a.
NCBI ID   WP_013323441.1    Uniprot ID   E0UEC6
Organism   Gloeothece verrucosa PCC 7822     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3780723..3793596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN7822_RS16685 (Cyan7822_3418) - 3781002..3781187 (-) 186 WP_041933797.1 PCP reductase family protein -
  CYAN7822_RS16690 (Cyan7822_3419) kaiC 3781394..3782914 (-) 1521 WP_041933798.1 circadian clock protein KaiC -
  CYAN7822_RS16695 (Cyan7822_3420) - 3783038..3783328 (-) 291 WP_013323438.1 circadian clock KaiB family protein -
  CYAN7822_RS16700 (Cyan7822_3421) - 3783331..3784203 (-) 873 WP_013323439.1 response regulator -
  CYAN7822_RS16705 (Cyan7822_3422) - 3784477..3785271 (-) 795 WP_013323440.1 MlaE family lipid ABC transporter permease subunit -
  CYAN7822_RS16710 (Cyan7822_3423) pilJ 3785723..3788596 (-) 2874 WP_013323441.1 methyl-accepting chemotaxis protein Machinery gene
  CYAN7822_RS16715 (Cyan7822_3424) - 3788679..3789209 (-) 531 WP_013323442.1 chemotaxis protein CheW -
  CYAN7822_RS16720 (Cyan7822_3425) pilH 3789260..3789631 (-) 372 WP_013323443.1 response regulator Machinery gene
  CYAN7822_RS16725 (Cyan7822_3426) - 3789892..3791112 (-) 1221 WP_245602587.1 response regulator -
  CYAN7822_RS16730 (Cyan7822_3427) hmpF 3791477..3793084 (+) 1608 WP_013323445.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 957 a.a.        Molecular weight: 105763.61 Da        Isoelectric Point: 4.3061

>NTDB_id=38386 CYAN7822_RS16710 WP_013323441.1 3785723..3788596(-) (pilJ) [Gloeothece verrucosa PCC 7822]
MTSGIDYVKQYGKANAAYCRGDLDEAVSLIDQLAQEYPDDPHTLLLRGHIFLSMQQYQIAQQEYEKVLKITQQPDLLDYA
ERGLEQIQLVESDFDEMDFTIDETEGFTVSQANLNTDESFEQPDFSHWSQHPDMPDLEEMDWGNQPTVHWNPDDDDMGEP
TIGKEFSRHQFANPFAEDAETSFNPDLSQFEDLAETFGLPSEPSHHPELERYVNSLDQPGADDDQTNFYWHNNADEDEQR
HLSFIEEDNNGFNSNGYRSNFDQFSDTGESTLVVSSDLPSNALKSNATKFLGKNPSNGKFSENLAADHSDSWNEEAFRKE
PQQRKPLSSHTQQPANSDGFLNDLEVFNDDDLDGLSQFDITDVAQSLPDSGLFERHTDGLDSGLETGSGISAAAMEASSI
SKINWTDVGENSSANLTGASTRFIKPTVEIEQGKFSALKNLPLKRKQWITAGIAGLTSVATIFLISSAIWMFSPKQPSKK
ADSPANKTESVSSNPKKSDPKTDKKTTPKKNSSSSTALQAQQTAAISPFSPSMLLMMLLTGGATFGATLFFARLSTNQIK
QTVDDLQTQFDAIYAGDFNVKATVYSEDELGQLSARFNQMAQAILTTTSEAQRRAAETEQQKEDLQRQVIRLLDDVEGAA
RGDLTVEAEVTADVLGAVADAFNLTIQNLREIVRQVKKAAEQVNKGSTDSELFARNQSSDALRMAEELAVTLNSVQMMTD
SIQRVAENAREAEEVARTSSVTALKGGESVERTVAGILQIRETVSETARKVKRLAEASQEINKIVAVVSQIASRTNLLAL
NASIQAARAGEAGRGFAIVADEVRQLADRSAKSLKEIEQIVLQIQSETGSVMTAMEEGIQQVIDVTERSEQAKRSLEDII
QVSNRIDSLVRSITGDTVKQRENSREVAQVMQSVELTAQETSQESQRVAGSLQTLVKISRDLLESVERFKVDKNDYK

Nucleotide


Download         Length: 2874 bp        

>NTDB_id=38386 CYAN7822_RS16710 WP_013323441.1 3785723..3788596(-) (pilJ) [Gloeothece verrucosa PCC 7822]
ATGACTTCAGGAATAGATTATGTTAAACAGTATGGAAAAGCGAATGCAGCTTATTGTCGAGGGGATTTAGACGAAGCGGT
TTCGCTCATTGACCAATTGGCTCAAGAGTATCCTGATGACCCTCATACTTTACTGTTACGAGGGCATATTTTCCTAAGTA
TGCAGCAATATCAAATAGCTCAACAAGAATATGAGAAGGTTCTTAAAATTACTCAACAGCCAGATTTGCTCGATTATGCC
GAAAGAGGTTTAGAACAGATTCAACTCGTCGAGTCCGATTTTGACGAAATGGACTTTACTATCGATGAAACTGAAGGATT
TACCGTTAGTCAGGCCAACTTAAATACTGATGAGTCTTTTGAGCAACCCGATTTTTCCCATTGGTCTCAACATCCAGATA
TGCCAGATTTGGAGGAGATGGACTGGGGTAACCAACCTACGGTCCACTGGAATCCTGATGACGACGATATGGGAGAGCCG
ACGATCGGCAAGGAGTTTTCTAGACATCAATTTGCTAATCCTTTTGCTGAAGATGCTGAAACCTCTTTTAATCCTGACCT
ATCTCAGTTCGAAGATTTAGCGGAAACTTTCGGACTCCCCTCAGAACCCTCTCACCATCCTGAACTAGAACGCTACGTTA
ACTCTTTGGATCAACCCGGAGCAGACGACGATCAAACAAACTTTTACTGGCACAATAATGCTGATGAAGATGAGCAAAGA
CATCTCTCCTTCATCGAAGAAGATAACAACGGATTCAACTCTAACGGCTATAGGTCCAATTTTGATCAGTTTTCCGATAC
CGGCGAATCAACTTTGGTGGTTTCTTCAGATTTGCCAAGTAATGCCTTAAAGTCGAATGCCACAAAATTTTTGGGAAAAA
ACCCTTCTAATGGCAAGTTTTCCGAAAACTTAGCGGCTGATCATTCAGATAGCTGGAATGAGGAGGCTTTTAGAAAAGAA
CCCCAGCAACGAAAACCTCTGTCTTCTCATACTCAACAACCTGCCAATAGTGATGGATTTCTCAATGATTTGGAGGTCTT
TAATGACGACGATTTAGACGGACTTTCTCAATTTGATATTACGGATGTGGCTCAGTCTTTACCAGATTCGGGACTTTTTG
AACGTCATACGGATGGTTTAGACAGTGGTCTAGAAACCGGCTCCGGCATTAGTGCTGCCGCTATGGAAGCGTCGTCTATT
AGTAAGATCAATTGGACTGATGTAGGAGAAAATTCCAGTGCTAATTTAACGGGTGCATCTACTCGATTTATCAAACCCAC
TGTTGAAATAGAACAAGGCAAGTTTTCAGCGCTTAAAAATCTTCCTTTAAAAAGAAAACAGTGGATTACTGCCGGCATCG
CCGGGTTAACATCAGTGGCAACGATTTTTTTAATCAGTAGTGCTATTTGGATGTTTAGCCCGAAACAACCCTCTAAAAAG
GCCGATTCTCCGGCTAACAAAACTGAATCAGTGTCTTCTAATCCGAAGAAATCTGACCCGAAAACAGATAAGAAAACAAC
GCCTAAGAAAAATTCGTCTTCGTCTACTGCTTTACAAGCTCAACAAACAGCCGCTATTTCTCCTTTTAGTCCCTCTATGC
TGTTGATGATGCTATTGACTGGTGGCGCAACTTTTGGGGCGACCTTATTTTTTGCCCGCCTCAGTACCAATCAAATTAAG
CAAACGGTAGATGATTTACAGACTCAATTTGATGCTATCTATGCTGGAGATTTTAACGTTAAAGCGACTGTTTATTCAGA
AGATGAACTCGGACAACTATCGGCTAGATTTAATCAAATGGCTCAGGCGATTTTAACTACCACCAGCGAGGCTCAAAGAC
GCGCCGCCGAAACGGAACAGCAAAAAGAAGATTTACAACGTCAAGTGATTCGCCTCCTGGATGATGTTGAAGGTGCAGCC
CGAGGAGATTTAACCGTAGAAGCTGAAGTTACCGCCGATGTTCTCGGTGCTGTGGCAGATGCGTTTAATCTGACGATTCA
AAATCTTAGAGAAATCGTCCGACAAGTTAAAAAAGCGGCTGAACAGGTGAACAAAGGCTCTACCGATAGTGAGTTATTTG
CGCGGAATCAGTCTAGCGATGCTCTGCGGATGGCTGAAGAGTTGGCGGTGACGCTCAATTCTGTGCAAATGATGACGGAT
TCGATTCAACGGGTCGCTGAAAATGCTCGCGAAGCTGAAGAAGTGGCTCGTACTTCCTCGGTAACGGCGCTTAAAGGCGG
TGAATCGGTAGAACGAACGGTAGCCGGTATTTTGCAAATTCGAGAAACAGTATCCGAAACCGCAAGAAAGGTAAAACGTT
TAGCAGAAGCTTCTCAAGAAATTAATAAGATTGTGGCAGTGGTTTCTCAAATTGCCTCTCGGACTAATTTATTGGCTCTC
AATGCTTCGATTCAAGCGGCTAGGGCGGGAGAAGCGGGGCGAGGATTTGCCATTGTGGCGGATGAGGTACGACAATTGGC
GGATCGTTCTGCTAAGTCATTAAAAGAAATTGAACAAATCGTTTTACAAATTCAAAGTGAAACGGGTTCAGTTATGACGG
CGATGGAAGAAGGAATTCAACAGGTTATCGATGTAACTGAGCGCTCAGAACAGGCAAAGCGTTCTCTTGAGGATATTATT
CAGGTATCTAATCGGATTGATTCTTTGGTACGTTCTATTACGGGTGATACGGTTAAACAACGGGAAAATTCCCGCGAAGT
GGCTCAGGTTATGCAGTCAGTAGAGTTAACGGCTCAAGAAACCTCTCAAGAGTCACAACGGGTAGCGGGTTCTCTACAAA
CTTTGGTGAAAATTTCCCGCGATTTGCTGGAATCTGTAGAGCGTTTTAAGGTGGATAAAAATGATTACAAATAA

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(559-604)

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(734-914)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0UEC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

48.613

100

0.494

Multiple sequence alignment