Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HC362_RS08630 Genome accession   NZ_CP050693
Coordinates   2064833..2066452 (-) Length   539 a.a.
NCBI ID   WP_243083321.1    Uniprot ID   -
Organism   Streptomyces sp. 891-h     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2059833..2071452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC362_RS08610 - 2060788..2061201 (+) 414 Protein_1715 M23 family metallopeptidase -
  HC362_RS08615 (HC362_08570) - 2061452..2061991 (-) 540 WP_243088438.1 TetR/AcrR family transcriptional regulator -
  HC362_RS08620 (HC362_08575) whiG 2062092..2062946 (-) 855 WP_243083319.1 RNA polymerase sigma factor WhiG -
  HC362_RS08625 (HC362_08580) dprA 2063244..2064512 (-) 1269 WP_243083320.1 DNA-processing protein DprA -
  HC362_RS08630 (HC362_08585) comM 2064833..2066452 (-) 1620 WP_243083321.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HC362_RS08635 (HC362_08590) - 2066452..2066808 (-) 357 WP_209267792.1 YraN family protein -
  HC362_RS08640 (HC362_08595) - 2067231..2067554 (-) 324 WP_027735391.1 DUF2469 domain-containing protein -
  HC362_RS08645 (HC362_08600) lepB 2067594..2068331 (-) 738 WP_243083322.1 signal peptidase I -
  HC362_RS08650 (HC362_08605) lepB 2068444..2069523 (-) 1080 WP_243083323.1 signal peptidase I -
  HC362_RS08655 (HC362_08610) lepB 2069528..2070517 (-) 990 WP_243088439.1 signal peptidase I -

Sequence

Protein


Download         Length: 539 a.a.        Molecular weight: 55966.53 Da        Isoelectric Point: 7.2595

>NTDB_id=381706 HC362_RS08630 WP_243083321.1 2064833..2066452(-) (comM) [Streptomyces sp. 891-h]
MAFARTYAVALVGVEGVPVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGVPWPQKKLTVGLSPASVPKGGSG
FDIAVACAVLAAAERIDPREIAGVVMIGELGLDGRVLPVRGVLPAVLAAADAGYRQVVVPEQTAAEAALVPDVSVLGVRS
LRQLIAVLTDEPVPEEPDPAAEGLPEAAHAGLAGLPMAAPGLTGLLGEERPVDLADVAGQSHARRALEIAAAGRHHIYFK
GPPGAGKTMLAERLPGLLPPLSRKESLEVTAVHSVAGALPPGQPLVARPPYCAPHHSATMAALVGGGSGLPRPGAVSLAH
NGVLFLDEAAECGAQVLDAMRQPLESGYVVVARAAGMMRMPARFLLALAANPCPCGRHGSTVGGCECRPASVRRYRARLS
GPLLDRVDLRVSVEPLARSELAAVDGRAESTAVVAARVLEARERAAARYAGTPWKTNNEVPGHELRTRHPACPKALTEAE
DELERGLLTARGLDRVLRVAWTVADLAGHPRPTRDDVNVALALRTGVRRSPALVPDIPA

Nucleotide


Download         Length: 1620 bp        

>NTDB_id=381706 HC362_RS08630 WP_243083321.1 2064833..2066452(-) (comM) [Streptomyces sp. 891-h]
ATGGCATTCGCCCGTACGTACGCAGTCGCACTGGTCGGGGTCGAGGGGGTGCCGGTCGAGGTGCAGGCCGATCTGGAGCC
GGGTGTCGCCGCCTTCACCCTGGTCGGACTGCCCGACAAGAGCTTGACGGAGAGCCGGGACCGGGTGCGGGCCGCGGTGG
TCAACTCCGGTGTGCCCTGGCCGCAGAAGAAGCTCACCGTCGGCCTCAGCCCCGCCTCGGTGCCCAAGGGAGGCAGCGGG
TTCGACATCGCGGTCGCCTGCGCGGTACTCGCGGCGGCGGAACGGATCGACCCACGGGAGATCGCCGGTGTCGTGATGAT
CGGCGAACTCGGGCTGGACGGCCGGGTACTGCCGGTCCGCGGTGTCCTCCCCGCCGTGCTGGCGGCTGCCGATGCCGGAT
ACCGGCAGGTGGTCGTGCCCGAGCAGACGGCAGCCGAAGCGGCGCTGGTCCCGGATGTCTCGGTGCTCGGCGTCCGTAGC
CTGCGCCAGCTCATCGCGGTGCTGACCGACGAGCCGGTGCCCGAGGAGCCCGACCCGGCCGCCGAAGGACTCCCGGAGGC
CGCACACGCCGGTCTGGCCGGCCTGCCCATGGCGGCACCGGGCCTCACCGGCCTGCTGGGCGAGGAGCGCCCCGTGGACC
TCGCCGACGTCGCAGGACAGAGCCATGCGCGCCGCGCCCTGGAGATCGCTGCGGCCGGACGGCACCACATCTATTTCAAG
GGCCCTCCCGGGGCCGGGAAAACCATGCTCGCCGAACGGCTGCCGGGGCTCCTGCCCCCGCTCAGCCGGAAGGAGTCGCT
GGAGGTCACGGCGGTGCACTCGGTCGCGGGCGCCCTGCCGCCCGGCCAGCCACTGGTCGCCCGGCCGCCCTACTGCGCAC
CCCACCACTCGGCCACCATGGCGGCGCTGGTCGGCGGCGGCTCCGGGCTGCCGCGCCCCGGTGCCGTCTCCCTGGCGCAC
AACGGAGTGCTCTTCCTGGACGAGGCTGCCGAATGTGGAGCTCAGGTGCTGGATGCCATGCGGCAGCCGCTGGAGTCCGG
GTATGTCGTCGTGGCACGGGCTGCGGGGATGATGCGGATGCCCGCCCGGTTCCTGCTCGCGCTGGCGGCCAACCCGTGTC
CTTGCGGACGGCACGGCAGCACTGTGGGCGGGTGCGAGTGTCGGCCCGCCTCGGTGCGCCGCTACCGGGCGCGGCTGTCC
GGGCCTCTGCTGGACCGTGTCGACCTCCGCGTCAGCGTGGAACCGCTCGCCCGCTCCGAACTGGCCGCTGTGGACGGCCG
GGCCGAGTCGACAGCCGTTGTGGCGGCGCGGGTGCTGGAGGCCAGGGAGCGCGCGGCGGCACGGTACGCGGGCACTCCGT
GGAAGACCAACAACGAGGTGCCAGGGCACGAACTGCGCACCCGTCACCCCGCCTGTCCCAAGGCCCTCACCGAGGCCGAG
GACGAACTGGAACGGGGCCTGCTGACAGCGCGCGGCCTCGACCGGGTGCTACGGGTCGCCTGGACGGTCGCCGACCTGGC
GGGCCACCCCCGGCCCACCCGGGACGACGTCAACGTAGCCCTGGCACTGAGGACCGGCGTCCGCCGGAGCCCCGCCCTCG
TCCCGGACATCCCCGCATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-524)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.84

97.217

0.397
  comM Vibrio cholerae strain A1552

40.84

97.217

0.397
  comM Vibrio campbellii strain DS40M4

39.962

98.887

0.395
  comM Glaesserella parasuis strain SC1401

39.394

97.959

0.386
  comM Acinetobacter baylyi ADP1

38.722

98.701

0.382
  comM Haemophilus influenzae Rd KW20

39.015

97.959

0.382
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

38.507

94.434

0.364
  comM Legionella pneumophila str. Paris

36.567

99.443

0.364
  comM Legionella pneumophila strain ERS1305867

36.567

99.443

0.364

Multiple sequence alignment