Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FRD49_RS01675 Genome accession   NZ_CP042994
Coordinates   351591..353756 (+) Length   721 a.a.
NCBI ID   WP_148356606.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346591..358756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS01655 (FRD49_01655) comM 348551..349609 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  FRD49_RS01660 (FRD49_01660) pilN 349609..350253 (+) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  FRD49_RS01665 (FRD49_01665) pilO 350250..350990 (+) 741 WP_148356605.1 type 4a pilus biogenesis protein PilO Machinery gene
  FRD49_RS01670 (FRD49_01670) pilP 351001..351528 (+) 528 WP_006582542.1 pilus assembly protein PilP Machinery gene
  FRD49_RS01675 (FRD49_01675) pilQ 351591..353756 (+) 2166 WP_148356606.1 type IV pilus secretin PilQ Machinery gene
  FRD49_RS01680 (FRD49_01680) aroK 353768..354337 (+) 570 WP_002051689.1 shikimate kinase AroK -
  FRD49_RS01685 (FRD49_01685) aroB 354366..355448 (+) 1083 WP_002051763.1 3-dehydroquinate synthase -
  FRD49_RS01690 (FRD49_01690) - 355464..356339 (+) 876 WP_004711666.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77707.98 Da        Isoelectric Point: 6.9035

>NTDB_id=380030 FRD49_RS01675 WP_148356606.1 351591..353756(+) (pilQ) [Acinetobacter nosocomialis strain J1A]
MNQVFRQFSMGAVAVAIMQAASAQVSMTNIVPTQVAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSVQPNNKPVPVVTAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPAHLARRLNVNDFATPVSSIGAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNKNLLVGGSETTLWNLRQPEKDSTTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQTAKVATGQQVPYQTTTNSASGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPFFGDIPVVGHLFRKDVKSDDKQELLIFVTPRIVNDTLARN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=380030 FRD49_RS01675 WP_148356606.1 351591..353756(+) (pilQ) [Acinetobacter nosocomialis strain J1A]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTGTTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATAGTACCAACGCAAGTTGCAGGTCAGGGCACAGAAATTAGAGTTATATTTAATGGATTGCCACCACAGCCAC
AGGCTTACCAACTTGAAAATCCGTCACGGTTAATATTAGATTTTGATAAAGCTCAACAAAGTTTAAAACAGTCTAAAATT
GCTGTTGCAACCAATGAAGCAAGCTCTGTTGATGTAACTTCAGATGATCAGCGTTCACGTTTGACTGTAAATTTAAAAGA
TGCTGGAGCGTTTACAACACGTGTGGAAGGTAATACTTTCATTTTAAAAATTAATTCGGTCCAACCGAATAATAAACCTG
TGCCAGTAGTTACTGCACAACCACAAGGTGTTTCAAACATTGGATTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTGGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACTTTAGGTACAAA
AATTCCGGCACATTTGGCGCGTCGTCTAAATGTAAATGATTTTGCAACACCAGTCTCAAGTATTGGTGCTTATAATGATA
AAGGTGCTGGTGTAATTACTATTCAGTCATCTGGTAGCTACGAATACATGGCATATCAGGCTGAAAATAAGCTCACAATC
AGTTTGAAACGACCACAAGATAAAAATGTAACTTCTTTATATAAAACGCCAAATTATTCTGGAAATAAGCTTTCGCTAGA
TTTTCAAGACATCGAAGTGCGCCGTGTTTTACAGCTCCTTGCTGATTTTACGGGAATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAATATCACGCTACGTTTGAAAGATGTACCTTGGGATCAGGCTCTGGATATTATTTTAAAAACTAAAAATCTT
GATAAACGTCGTAATGGGAATGTGATTTGGATTGCTCCTGTTGCAGAGTTGATTAAAGCGGAAGAGGAAGAAGCGAAAGC
TGTGGCGCAAAGTGTAAAACTTGCTCCGTTACAGACAGAGTATATTCAACTTAAATACGCTAAAGCTGGCGATATTATGG
GTTTAATTACCCAAGGCTCAAATAATAGTAATGGCTTACAACATACTTCTGGTGGAGGAACTTCAACTTCAACCAATTTA
AATACTGGCGTTGATAGTCTTGGGAATAATGTGGGTAGTTTACTTAGCCCTCGCGGTACCATTACTCAAGATGACCGAAC
TAATACTCTTATTATTAATGATACTGCTCAGTCGATTGATCAAATCCGAAAAATGATTGACTTGCTTGATGTGCAAGTTA
AACAGGTTATGGTTGAAGCACGTATTGTGAGAGCGTCTACGTCGTTTACCAAAGAACTTGGTGTGAAGTGGGGCATTCTT
TCGCAAGGTATTACCAATAATAAAAACTTGTTGGTTGGTGGTAGTGAAACAACTTTATGGAATTTAAGACAGCCAGAAAA
AGATAGTACAACTGGTGGTTATAAATATACGATTGAGCGTCCAGATAATTTAAACGTTGATTTGGGGGTTTCTAATCCAG
CAGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATTTTATGTTGGACCTTGAATTATCTGCTTTACAAGCTGATGGT
TATGGTGAAGTGATTTCAACTCCTAAAGTGATGACTGCCGATAAGCAAACTGCAAAAGTTGCCACGGGTCAACAAGTTCC
TTATCAGACGACAACTAACTCTGCTTCGGGCTCAACAGCCACAACATCATTTAAAGATGCATTACTAAGCCTAAATGTAA
CTCCAAGTATTACGCCTGACGGTAAGATTCAAATGAAATTGGATATTTCTAAGGATTCTGTAGCAGGTGCGGCCCCAAAT
GGTGAGTTGATTCTGAATAAGAATAATATTAATACCAATGTGCTGGTTGATAATGGAGAAACCGTTATTTTAGGTGGTGT
ATTCGAGCAAACAACGACGAATTCTCAAACCAAAGTTCCGTTTTTTGGTGATATTCCTGTTGTAGGGCATTTATTTAGAA
AAGATGTAAAGTCTGATGATAAGCAAGAATTATTGATTTTCGTAACACCACGAATTGTTAATGACACTTTAGCGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(555-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

96.671

100

0.967
  pilQ Acinetobacter baumannii strain A118

96.533

100

0.965
  comQ Acinetobacter baylyi ADP1

74.55

100

0.748
  pilQ Pseudomonas aeruginosa PAK

39.566

100

0.405

Multiple sequence alignment