Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | FWK43_RS09115 | Genome accession | NZ_CP042983 |
| Coordinates | 1984001..1984336 (+) | Length | 111 a.a. |
| NCBI ID | WP_132994579.1 | Uniprot ID | - |
| Organism | Histophilus somni strain UOC-KLM-ATR-01 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1979001..1989336
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FWK43_RS09090 (FWK43_09090) | - | 1980327..1980806 (-) | 480 | WP_011608283.1 | Dps family protein | - |
| FWK43_RS09095 (FWK43_09095) | - | 1980959..1981528 (-) | 570 | WP_011608282.1 | anthranilate synthase component II | - |
| FWK43_RS09100 (FWK43_09100) | - | 1981585..1982592 (+) | 1008 | WP_132994581.1 | aminodeoxychorismate synthase component I | - |
| FWK43_RS09105 (FWK43_09105) | - | 1982741..1983322 (+) | 582 | WP_011608280.1 | aminotransferase class IV family protein | - |
| FWK43_RS09110 (FWK43_09110) | - | 1983383..1983772 (+) | 390 | WP_132994580.1 | RidA family protein | - |
| FWK43_RS09115 (FWK43_09115) | comE1/comEA | 1984001..1984336 (+) | 336 | WP_132994579.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FWK43_RS09120 (FWK43_09120) | rdgB | 1984526..1985122 (+) | 597 | WP_132994578.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| FWK43_RS09125 (FWK43_09125) | hemW | 1985122..1986300 (+) | 1179 | WP_132994577.1 | radical SAM family heme chaperone HemW | - |
| FWK43_RS09130 (FWK43_09130) | rpiA | 1986396..1987055 (+) | 660 | WP_075293545.1 | ribose-5-phosphate isomerase RpiA | - |
| FWK43_RS09135 (FWK43_09135) | serA | 1987081..1988313 (+) | 1233 | WP_075293546.1 | phosphoglycerate dehydrogenase | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12169.16 Da Isoelectric Point: 10.2041
>NTDB_id=379774 FWK43_RS09115 WP_132994579.1 1984001..1984336(+) (comE1/comEA) [Histophilus somni strain UOC-KLM-ATR-01]
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEQVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEQVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
Nucleotide
Download Length: 336 bp
>NTDB_id=379774 FWK43_RS09115 WP_132994579.1 1984001..1984336(+) (comE1/comEA) [Histophilus somni strain UOC-KLM-ATR-01]
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGTGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACAGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAGAATAGAGA
TCGTATCATTTTCTAG
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGTGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACAGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAGAATAGAGA
TCGTATCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.459 |
100 |
0.595 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
52.586 |
100 |
0.55 |
| comEA | Vibrio cholerae C6706 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio cholerae strain A1552 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio campbellii strain DS40M4 |
43.269 |
93.694 |
0.405 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
50.617 |
72.973 |
0.369 |