Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   HB729_RS16660 Genome accession   NZ_CP050333
Coordinates   3602177..3603685 (-) Length   502 a.a.
NCBI ID   WP_023102978.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT412     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3597177..3608685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB729_RS16630 (HB729_16675) xcpX 3597890..3598891 (-) 1002 WP_023102979.1 GspK family T2SS minor pseudopilin variant XcpX -
  HB729_RS16635 (HB729_16680) xcpW 3598888..3599601 (-) 714 WP_003110067.1 GspJ family T2SS minor pseudopilin variant XcpW -
  HB729_RS16640 (HB729_16685) xcpV 3599598..3599987 (-) 390 WP_003103528.1 GspI family T2SS minor pseudopilin variant XcpV -
  HB729_RS16645 (HB729_16690) xcpU 3599984..3600502 (-) 519 WP_003103530.1 GspH family T2SS minor pseudopilin variant XcpU -
  HB729_RS16650 (HB729_16695) xcpT 3600509..3600955 (-) 447 WP_003119751.1 GspG family T2SS major pseudopilin variant XcpT -
  HB729_RS16655 (HB729_16700) xcpS 3600960..3602177 (-) 1218 WP_003091376.1 GspF family T2SS innner membrane protein variant XcpS -
  HB729_RS16660 (HB729_16705) pilB 3602177..3603685 (-) 1509 WP_023102978.1 GspE family T2SS ATPase variant XcpR Machinery gene
  HB729_RS16665 (HB729_16710) xcpP 3603905..3604612 (+) 708 WP_003119750.1 type II secretion system protein N -
  HB729_RS16670 (HB729_16715) xcpQ 3604617..3606593 (+) 1977 WP_003103536.1 GspD family T2SS secretin variant XcpQ -
  HB729_RS16675 (HB729_16720) - 3606678..3607445 (-) 768 WP_003130406.1 SDR family oxidoreductase -
  HB729_RS16680 (HB729_16725) - 3607442..3608653 (-) 1212 WP_003113933.1 O-succinylhomoserine sulfhydrylase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55552.78 Da        Isoelectric Point: 6.2074

>NTDB_id=379181 HB729_RS16660 WP_023102978.1 3602177..3603685(-) (pilB) [Pseudomonas aeruginosa strain DVT412]
MMTAPLPDIAVPAAPPRRLPFSFAKRQGLLFLCLEEQYWLACRPQVELAAIAEAQRFAGRRLPLKALGEDAFNQALAASY
QHDSSAAMQLAEDLGGSLDLAALADQVPETEDLMEQEDDAPIIRLINAILGEAIRENASDIHLETFEKRLVVRFRVDGVL
REVLEPKRELAALLVSRIKVMARLDIAEKRIPQDGRISLRVGGREVDIRVSTLPSANGERVVLRLLDKQAGRLNLQHLGM
SERDRKLMDETVRKPHGILLVTGPTGSGKTTTLYASLTTLNDRTRNILTVEDPIEYHLEGIGQTQVNAKVDMTFARGLRA
ILRQDPDVVMVGEIRDRETAEIAVQASLTGHLVLSTLHTNSAIGAITRLVDMGIEPFLLSSSMLGVLAQRLVRVLCPACK
EPYRADEAECALLGVDPAAPPTLHRARGCGECHQHGYRGRTGIYELVVFDDHMRSLIHNESSEQEMTRHARTSGPSIRDD
GRRKVLEGVTTVEEVLRVTREE

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=379181 HB729_RS16660 WP_023102978.1 3602177..3603685(-) (pilB) [Pseudomonas aeruginosa strain DVT412]
ATGATGACAGCCCCATTACCCGACATCGCCGTGCCGGCCGCACCGCCACGGCGTCTGCCGTTCAGCTTCGCCAAGCGCCA
GGGCCTGCTGTTCCTGTGCCTGGAGGAGCAGTACTGGCTGGCCTGCCGGCCGCAGGTGGAGCTGGCGGCGATCGCCGAGG
CGCAGCGCTTCGCCGGCCGCCGCCTGCCGCTCAAGGCGCTCGGCGAGGACGCCTTCAACCAGGCCCTGGCGGCCTCCTAC
CAGCACGACTCCTCGGCGGCCATGCAGCTCGCCGAGGACCTCGGCGGCAGCCTGGACCTCGCCGCGCTGGCCGACCAGGT
CCCGGAAACCGAGGACCTGATGGAGCAGGAGGACGACGCGCCGATCATTCGCCTGATCAACGCGATCCTCGGCGAGGCGA
TCCGCGAGAACGCCTCGGACATCCACCTGGAAACCTTCGAGAAACGCCTGGTGGTGCGCTTCCGCGTCGACGGCGTGCTG
CGCGAGGTGCTGGAGCCCAAGCGCGAGCTGGCGGCCCTGCTGGTATCGCGGATCAAGGTCATGGCACGGCTGGACATCGC
CGAGAAGCGTATTCCCCAGGATGGGCGGATTTCCCTGCGGGTCGGCGGGCGCGAGGTGGACATCCGCGTCTCGACCCTGC
CCTCGGCCAACGGTGAACGGGTGGTGCTGCGTCTGCTCGACAAGCAGGCCGGGCGCCTGAACCTGCAGCACCTGGGCATG
AGCGAGCGCGACCGCAAGCTGATGGACGAAACGGTGCGCAAGCCGCACGGCATCCTGCTGGTCACCGGCCCCACCGGCTC
GGGCAAGACCACCACCCTGTACGCCAGCCTGACCACGCTCAACGACCGCACGCGGAACATCCTCACCGTCGAGGATCCGA
TCGAATACCACCTGGAGGGCATCGGCCAGACCCAGGTCAACGCCAAGGTCGACATGACCTTCGCCCGCGGCCTGCGGGCG
ATCCTCCGGCAGGACCCGGACGTGGTGATGGTCGGCGAGATCCGCGACCGGGAGACCGCCGAGATCGCGGTGCAGGCTTC
GCTGACCGGCCACCTGGTGCTCTCGACCCTGCACACCAACAGCGCCATCGGTGCGATCACCCGCCTGGTGGACATGGGCA
TCGAGCCGTTCCTGCTGTCCTCCTCCATGCTTGGCGTGCTGGCCCAGCGCCTGGTGCGGGTGCTCTGCCCGGCGTGCAAG
GAGCCCTACCGCGCCGACGAGGCCGAGTGCGCGCTGCTCGGCGTCGATCCCGCCGCGCCGCCGACCCTGCATCGCGCCCG
CGGCTGCGGCGAGTGCCACCAGCATGGCTATCGCGGGCGTACCGGTATCTATGAGCTGGTGGTGTTCGACGACCACATGC
GCTCGCTGATCCACAACGAATCCTCCGAGCAGGAAATGACCCGGCATGCCCGCACCAGCGGACCGAGCATCCGCGACGAC
GGTCGGCGCAAGGTGCTGGAAGGCGTCACCACGGTCGAGGAAGTCCTGCGCGTGACCCGGGAAGAATAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(128-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Vibrio cholerae strain A1552

43.532

97.012

0.422
  pilB/pilB1 Synechocystis sp. PCC 6803

42.245

97.61

0.412
  pilB Vibrio campbellii strain DS40M4

43.249

94.422

0.408
  pilB Vibrio parahaemolyticus RIMD 2210633

47.045

84.263

0.396
  pilF Thermus thermophilus HB27

43.146

88.645

0.382
  pilB Acinetobacter baumannii D1279779

47.88

79.88

0.382
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.446

76.892

0.373
  pilF Neisseria gonorrhoeae MS11

46.954

78.486

0.369
  pilB Acinetobacter baylyi ADP1

47.68

77.291

0.369
  pilB Legionella pneumophila strain ERS1305867

47.423

77.291

0.367