Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FR761_RS17820 Genome accession   NZ_CP042556
Coordinates   3653542..3654183 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain E47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3648542..3659183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR761_RS17800 (FR761_17800) aroK 3649458..3650027 (-) 570 WP_000643712.1 shikimate kinase AroK -
  FR761_RS17805 (FR761_17805) pilQ 3650039..3652204 (-) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  FR761_RS17810 (FR761_17810) pilP 3652267..3652794 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  FR761_RS17815 (FR761_17815) pilO 3652805..3653545 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  FR761_RS17820 (FR761_17820) pilN 3653542..3654183 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  FR761_RS17825 (FR761_17825) pilM 3654183..3655241 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  FR761_RS17830 (FR761_17830) ponA 3655404..3657959 (+) 2556 WP_057069721.1 penicillin-binding protein PBP1a -
  FR761_RS17835 (FR761_17835) - 3657977..3658801 (-) 825 WP_002125608.1 putative RNA methyltransferase -
  FR761_RS17840 (FR761_17840) - 3658804..3659136 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=378441 FR761_RS17820 WP_000201224.1 3653542..3654183(-) (pilN) [Acinetobacter baumannii strain E47]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=378441 FR761_RS17820 WP_000201224.1 3653542..3654183(-) (pilN) [Acinetobacter baumannii strain E47]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment