Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FP568_RS02495 Genome accession   NZ_CP042219
Coordinates   528864..529379 (+) Length   171 a.a.
NCBI ID   WP_145862840.1    Uniprot ID   -
Organism   Pandoraea pnomenusa strain TF-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 523864..534379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP568_RS02485 (FP568_02485) uvrA 524293..527157 (-) 2865 WP_145862838.1 excinuclease ABC subunit UvrA -
  FP568_RS02490 (FP568_02490) - 527670..528833 (+) 1164 WP_145862839.1 MFS transporter -
  FP568_RS02495 (FP568_02495) ssb 528864..529379 (+) 516 WP_145862840.1 single-stranded DNA-binding protein Machinery gene
  FP568_RS02500 (FP568_02500) - 529645..530340 (+) 696 WP_145862841.1 HD domain-containing protein -
  FP568_RS02505 (FP568_02505) - 530354..530830 (-) 477 WP_145862842.1 Lrp/AsnC family transcriptional regulator -
  FP568_RS02510 (FP568_02510) - 530969..532225 (+) 1257 WP_145862843.1 Zn-dependent hydrolase -
  FP568_RS02515 (FP568_02515) - 532278..533510 (+) 1233 WP_145862844.1 diaminopropionate ammonia-lyase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17829.54 Da        Isoelectric Point: 5.3177

>NTDB_id=376071 FP568_RS02495 WP_145862840.1 528864..529379(+) (ssb) [Pandoraea pnomenusa strain TF-18]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTDRYSTEIVADQMQMLGGRSGGGEGGGGGGYSRGGGDEGGGGGGYSRGGGGGGGGGGGRQQAPAKPSG
GFDDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=376071 FP568_RS02495 WP_145862840.1 528864..529379(+) (ssb) [Pandoraea pnomenusa strain TF-18]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGCAACCTTGGCGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTCGCGAACATCCGCCTGGCCACGACCGACCGTTACAAGGACAAGCAGTCCGGCGAGTTCAAGGAAATGACGGAATGGC
ACCGCGTGTCGTTCTTCGGCCGGCTCGCGGAAATCGTCAATGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGC
CGTATCCGTACGCGCAAGTACCAGGCGCAGGACGGCACGGACCGTTACAGCACGGAAATCGTGGCGGACCAGATGCAGAT
GCTGGGCGGCCGCAGCGGCGGCGGTGAAGGTGGCGGCGGTGGCGGCTACTCGCGTGGTGGTGGCGACGAGGGCGGCGGTG
GCGGTGGCTATTCGCGTGGCGGTGGTGGTGGTGGTGGTGGCGGCGGTGGCCGTCAGCAGGCGCCGGCCAAGCCGTCCGGC
GGTTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.468

100

0.544
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.52
  ssb Neisseria meningitidis MC58

45

100

0.474
  ssb Neisseria gonorrhoeae MS11

45

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.778

100

0.398

Multiple sequence alignment