Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FPL17_RS12970 Genome accession   NZ_CP041970
Coordinates   2824442..2825929 (+) Length   495 a.a.
NCBI ID   WP_159886862.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2819442..2830929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS12945 (FPL17_13095) ribD 2820352..2821452 (-) 1101 WP_159885415.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  FPL17_RS12950 (FPL17_13100) nrdR 2821465..2821929 (-) 465 WP_004656377.1 transcriptional regulator NrdR -
  FPL17_RS12955 (FPL17_13105) - 2822056..2823462 (-) 1407 WP_004802125.1 ammonium transporter -
  FPL17_RS12960 (FPL17_13110) glnK 2823531..2823869 (-) 339 WP_004656379.1 P-II family nitrogen regulator -
  FPL17_RS12965 (FPL17_13115) - 2824145..2824372 (+) 228 WP_004802123.1 accessory factor UbiK family protein -
  FPL17_RS12970 (FPL17_13120) comM 2824442..2825929 (+) 1488 WP_159886862.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FPL17_RS12975 (FPL17_13125) - 2825972..2826760 (-) 789 WP_159885417.1 TorF family putative porin -
  FPL17_RS12980 (FPL17_13130) - 2827156..2827920 (+) 765 WP_159886864.1 sulfite exporter TauE/SafE family protein -
  FPL17_RS12985 (FPL17_13135) - 2828032..2828844 (-) 813 WP_005191715.1 TorF family putative porin -
  FPL17_RS12990 (FPL17_13140) - 2829585..2830904 (+) 1320 WP_159885419.1 OprD family outer membrane porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54180.76 Da        Isoelectric Point: 7.0807

>NTDB_id=375086 FPL17_RS12970 WP_159886862.1 2824442..2825929(+) (comM) [Acinetobacter dispersus strain NCCP 16014]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENSTEGFEFIGELALDGHLRPISGALTIAMACQQAQHRLLLPTSNLEEANQLPDFEVYAANHL
KDVCAHFSGNSQITAAPQRSDHGLTSYQLDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHSFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIEVPPLQAQELQDRTPVE
NSDTVRQRVINAYEKQIQRQHCLNQALSPKLLEQHALLDDSSTKIIEMAQQRLNLSARAYHRVLRVARTIADLAESECIS
SNHLTEALSYRGSQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=375086 FPL17_RS12970 WP_159886862.1 2824442..2825929(+) (comM) [Acinetobacter dispersus strain NCCP 16014]
ATGTCTTTTGCCAAAATCTATACGAGAGGCCTATTGGGCCTGCATGCCCCACAAATTGAAGTTGAGGTTCATATCAGTTC
AGGCTTGCCCTCGTTAACAATTGTGGGGCTACCTGAAGCAGCAGTACGTGAAAGTAAAGATCGTGTCCGCTCAGCTATTA
TTAATAGCGGTTTTCAGTTCCCAACCAAGCGCTTAACCATCAATTTAGCACCCGCTGATCTTCCTAAAGATGGTTCACGA
CTTGACCTCCCAATTGCCTTAGGTATCTTGATTGCTTCTGGACAACTTCCTGAAAATAGTACTGAAGGTTTTGAATTTAT
TGGGGAACTTGCATTAGATGGTCATTTACGCCCGATTTCAGGTGCATTGACCATCGCAATGGCCTGCCAACAGGCTCAAC
ATCGCCTGTTACTACCTACAAGCAATTTAGAAGAAGCCAATCAGCTTCCCGATTTTGAGGTATATGCGGCCAATCACCTA
AAGGATGTCTGTGCACATTTTTCGGGCAATTCGCAAATTACTGCTGCACCACAAAGATCAGATCATGGTTTAACCTCTTA
TCAACTTGATCTCGCAGACGTTAAAGGGCAATTACGGCCACGTCGTGCATTGGAGATTGCAGCAGCAGGTGGACATTCGC
TCTTATTTAAAGGTCCTCCTGGTACAGGTAAAACCTTACTCGCCTCTCGCCTTCCCTCCATTTTACCGCCACTCAATGCA
CAGGAAAATTTAGAGGTCGCCAGTATTTATTCAGTCGCCAATGCACAACATAGCTTTGGACAACGCCCTTTCCGAGCACC
ACACCATACCGCATCTGCGATCGCCTTGGTCGGTGGTGGTTCTCAACCCAAGCCTGGCGAAATCACCTTGGCGCATTTGG
GTGTTTTATTTTTGGATGAATTGCCCGAATTTGATCGCAAAGTCCTCGAAGTCTTGCGTCAACCACTAGAGTCCAAAGAA
ATTGTGATTTCTCGTGCAGCACGTCAAATGACCTTTCCTGCAAATTTTCAATTTATTGCCGCAATGAATCCCTGTCCCTG
TGGTTATGCCTTTAATCAGGATAGTCGCTGCCAATGCTCTCCTGAGAGTATCCAACGCTATCAAAATCGAATTTCCGGCC
CGCTGTTAGATCGGATTGATTTACATATTGAGGTTCCACCACTCCAAGCTCAGGAACTACAAGATCGGACTCCCGTCGAA
AATTCTGATACGGTACGACAACGCGTTATCAATGCTTATGAAAAACAGATCCAGAGACAACACTGTTTGAATCAGGCTCT
TTCACCGAAATTGCTGGAACAACATGCACTTTTAGATGACAGCTCAACCAAAATCATAGAAATGGCACAACAGCGTTTAA
ATCTCTCTGCCCGTGCTTACCATCGAGTCCTCCGTGTTGCCAGAACGATTGCTGACTTAGCTGAAAGCGAATGCATCAGT
AGCAATCATCTGACGGAAGCATTGTCTTATCGTGGTAGTCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.509

100

0.517
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Haemophilus influenzae Rd KW20

50.1

100

0.507
  comM Vibrio campbellii strain DS40M4

50.101

100

0.503
  comM Legionella pneumophila str. Paris

49.395

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.211

100

0.479

Multiple sequence alignment