Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   FO444_RS11760 Genome accession   NZ_CP041759
Coordinates   2292127..2293200 (-) Length   357 a.a.
NCBI ID   WP_098403501.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain IMAU11823     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2287127..2298200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO444_RS11715 (FO444_11675) - 2287266..2288075 (-) 810 WP_098403500.1 metal ABC transporter permease -
  FO444_RS11720 (FO444_11680) - 2288068..2288805 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  FO444_RS11725 (FO444_11685) - 2288982..2289824 (-) 843 WP_017865154.1 metal ABC transporter substrate-binding protein -
  FO444_RS11730 (FO444_11690) - 2289821..2290258 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  FO444_RS11735 (FO444_11695) comGG 2290339..2290623 (-) 285 WP_017865155.1 competence type IV pilus minor pilin ComGG Machinery gene
  FO444_RS11740 (FO444_11700) comGF 2290662..2291087 (-) 426 WP_017865156.1 competence type IV pilus minor pilin ComGF Machinery gene
  FO444_RS11745 (FO444_11705) comGE 2291071..2291367 (-) 297 WP_017865157.1 competence type IV pilus minor pilin ComGE Machinery gene
  FO444_RS11750 (FO444_11710) comGD 2291339..2291770 (-) 432 WP_026138965.1 competence type IV pilus minor pilin ComGD Machinery gene
  FO444_RS11755 (FO444_11715) comGC 2291730..2292065 (-) 336 WP_032948139.1 competence type IV pilus major pilin ComGC Machinery gene
  FO444_RS11760 (FO444_11720) comGB 2292127..2293200 (-) 1074 WP_098403501.1 competence type IV pilus assembly protein ComGB Machinery gene
  FO444_RS11765 (FO444_11725) comGA 2293094..2294032 (-) 939 WP_211752889.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 40339.56 Da        Isoelectric Point: 10.2437

>NTDB_id=373900 FO444_RS11760 WP_098403501.1 2292127..2293200(-) (comGB) [Lactococcus lactis subsp. lactis strain IMAU11823]
MSLGHQKIGIKKLISYLQMDISHLLKPKGKKLRLIKQAKLIQLMGNLLNSGFNLGEVINFLSLSKLVEKEFTLKMKEGLA
SGQALSELLESLSFSKNVVTQLALVEVHGDLSGTMQLVELHLKKQLKVKNKLVEVATYPILLLIFLVGIMWVLKNYLLPQ
LNSGSNFATLLINHLPLVFFSFGAFIFLLTALSVTLLKRKSAIMNFTFLVKLPLVHSFIRLYLTAYFAREWGNLIAQGVE
LRQIINLMKKQKSRIFSEVGKNLDLELNAGRSFEQAVSKLALFLPELSLMIEYGAIKDKLGLELSLYADECWEQFFTKID
RLMQLIQPLVFIFVALMIILLYAAMLLPIYSNMGSGI

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=373900 FO444_RS11760 WP_098403501.1 2292127..2293200(-) (comGB) [Lactococcus lactis subsp. lactis strain IMAU11823]
TTGAGTCTTGGTCATCAGAAAATTGGAATAAAAAAATTGATCAGCTACTTACAAATGGATATCTCACACCTACTGAAGCC
AAAAGGGAAAAAATTAAGACTGATTAAACAAGCCAAACTTATCCAACTGATGGGAAATCTTTTGAATAGTGGATTTAATT
TAGGAGAAGTGATAAATTTCTTATCTTTATCAAAACTTGTGGAAAAAGAATTTACATTAAAAATGAAAGAAGGTCTCGCT
TCTGGTCAAGCTTTATCAGAGCTTTTAGAAAGTCTTTCATTTTCTAAAAATGTGGTGACACAACTTGCTTTGGTAGAAGT
GCATGGTGACTTGTCAGGGACGATGCAATTAGTTGAACTTCATCTAAAAAAACAGCTTAAAGTTAAAAATAAATTAGTGG
AAGTTGCTACTTATCCAATATTGTTATTAATTTTTCTGGTTGGAATTATGTGGGTCTTAAAAAATTATTTACTACCACAA
CTCAATAGTGGCAGTAACTTTGCTACTCTATTGATTAATCATTTACCCTTAGTATTTTTTTCGTTTGGAGCTTTTATATT
TTTACTGACAGCTTTGTCAGTAACTCTTTTAAAACGAAAATCAGCAATAATGAATTTTACATTTCTTGTTAAATTACCTC
TGGTTCATTCTTTTATCCGTTTATATTTAACAGCTTACTTTGCAAGAGAATGGGGAAATCTAATTGCTCAAGGTGTTGAA
TTACGTCAAATTATTAACTTGATGAAAAAACAAAAAAGTCGAATTTTTTCAGAAGTTGGCAAGAATCTTGATTTAGAATT
GAATGCTGGTCGGTCTTTTGAACAAGCTGTCAGTAAACTTGCGCTTTTTTTACCCGAGCTCTCGTTAATGATTGAATATG
GAGCTATTAAAGATAAATTAGGCTTAGAGCTTTCGCTTTATGCGGATGAATGTTGGGAACAATTTTTTACAAAGATAGAT
CGTTTAATGCAATTAATCCAACCTCTTGTTTTTATTTTTGTAGCATTGATGATTATTTTGCTATATGCAGCCATGTTACT
CCCCATCTATTCAAATATGGGTTCTGGAATATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-348)

Type II secretion system (T2SS), protein F (T2SSF)

(41-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Lactococcus lactis subsp. cremoris KW2

82.698

95.518

0.79
  comYB Streptococcus gordonii str. Challis substr. CH1

53.079

95.518

0.507
  comYB Streptococcus mutans UA140

52.059

95.238

0.496
  comYB Streptococcus mutans UA159

51.765

95.238

0.493
  comGB/cglB Streptococcus mitis SK321

50.746

93.838

0.476
  comGB/cglB Streptococcus pneumoniae Rx1

50.448

93.838

0.473
  comGB/cglB Streptococcus pneumoniae D39

50.448

93.838

0.473
  comGB/cglB Streptococcus pneumoniae R6

50.448

93.838

0.473
  comGB/cglB Streptococcus pneumoniae TIGR4

50.448

93.838

0.473
  comGB/cglB Streptococcus mitis NCTC 12261

49.851

93.838

0.468

Multiple sequence alignment