Detailed information NTG0373896

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: FO444_RS11740
• Genome accession: NZ_CP041759
• Coordinates: 2290662..2291087 (-)
• Length: 141 a.a.
• NCBI ID: WP_017865156.1
• Uniprot ID: A0A9X4RYL5
• Organism: Lactococcus lactis subsp. lactis strain IMAU11823
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2285662..2296087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FO444_RS11705 (FO444_11665)	-	2285779..2286156 (-)	378	WP_003129983.1	pyridoxamine 5'-phosphate oxidase family protein	-
FO444_RS11710 (FO444_11670)	-	2286361..2287227 (+)	867	WP_058211147.1	RluA family pseudouridine synthase	-
FO444_RS11715 (FO444_11675)	-	2287266..2288075 (-)	810	WP_098403500.1	metal ABC transporter permease	-
FO444_RS11720 (FO444_11680)	-	2288068..2288805 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
FO444_RS11725 (FO444_11685)	-	2288982..2289824 (-)	843	WP_017865154.1	metal ABC transporter substrate-binding protein	-
FO444_RS11730 (FO444_11690)	-	2289821..2290258 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
FO444_RS11735 (FO444_11695)	comGG	2290339..2290623 (-)	285	WP_017865155.1	competence type IV pilus minor pilin ComGG	Machinery gene
FO444_RS11740 (FO444_11700)	comGF	2290662..2291087 (-)	426	WP_017865156.1	competence type IV pilus minor pilin ComGF	Machinery gene
FO444_RS11745 (FO444_11705)	comGE	2291071..2291367 (-)	297	WP_017865157.1	competence type IV pilus minor pilin ComGE	Machinery gene
FO444_RS11750 (FO444_11710)	comGD	2291339..2291770 (-)	432	WP_026138965.1	competence type IV pilus minor pilin ComGD	Machinery gene
FO444_RS11755 (FO444_11715)	comGC	2291730..2292065 (-)	336	WP_032948139.1	competence type IV pilus major pilin ComGC	Machinery gene
FO444_RS11760 (FO444_11720)	comGB	2292127..2293200 (-)	1074	WP_098403501.1	competence type IV pilus assembly protein ComGB	Machinery gene
FO444_RS11765 (FO444_11725)	comGA	2293094..2294032 (-)	939	WP_211752889.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 141 a.a.
• Molecular weight: 16254.87 Da
• Isoelectric Point: 8.4550

>NTDB_id=373896 FO444_RS11740 WP_017865156.1 2290662..2291087(-) (comGF) [Lactococcus lactis subsp. lactis strain IMAU11823]
MNFKVKAFTLLECLVALLAISGSVLVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQDFLYVTKDKK
LRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 426 bp

>NTDB_id=373896 FO444_RS11740 WP_017865156.1 2290662..2291087(-) (comGF) [Lactococcus lactis subsp. lactis strain IMAU11823]
TTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAATTTCTGGTTCAGTCCTTGTCAT
CTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAAAAGATTGGCAAATTTTCTGTC
AGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAGCAGGATTTTCTGTATGTAACTAAAGACAAAAAA
CTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTATCAGCCAATGCTTTATGATAT
AAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATCAAGGAGGTGAGAGAACATTTA
TTTATCAATTTCCGGAAGATACGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (41-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	76.259	98.582	0.752
comYF	Streptococcus mutans UA140	47.826	97.872	0.468
comYF	Streptococcus mutans UA159	47.101	97.872	0.461
comGF/cglF	Streptococcus mitis SK321	42.336	97.163	0.411
comGF/cglF	Streptococcus mitis NCTC 12261	42.336	97.163	0.411
comGF/cglF	Streptococcus pneumoniae Rx1	39.716	100	0.397
comGF/cglF	Streptococcus pneumoniae D39	39.716	100	0.397
comGF/cglF	Streptococcus pneumoniae R6	39.716	100	0.397
comGF/cglF	Streptococcus pneumoniae TIGR4	39.716	100	0.397