Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FOG18_RS10115 Genome accession   NZ_CP041668
Coordinates   2266657..2268798 (-) Length   713 a.a.
NCBI ID   WP_143868428.1    Uniprot ID   -
Organism   Legionella israelensis strain L18-01051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2261657..2273798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOG18_RS10095 (FOG18_10095) - 2263051..2263482 (-) 432 WP_058501748.1 universal stress protein -
  FOG18_RS10100 (FOG18_10100) - 2263512..2264960 (-) 1449 WP_143868424.1 AAA family ATPase -
  FOG18_RS10105 (FOG18_10105) aroB 2264964..2266070 (-) 1107 WP_143868426.1 3-dehydroquinate synthase -
  FOG18_RS10110 (FOG18_10110) aroK 2266057..2266578 (-) 522 WP_172460999.1 shikimate kinase AroK -
  FOG18_RS10115 (FOG18_10115) pilQ 2266657..2268798 (-) 2142 WP_143868428.1 type IV pilus secretin PilQ family protein Machinery gene
  FOG18_RS10120 (FOG18_10120) - 2268801..2269334 (-) 534 WP_143868430.1 pilus assembly protein PilP -
  FOG18_RS10125 (FOG18_10125) pilO 2269331..2269930 (-) 600 WP_143868432.1 type 4a pilus biogenesis protein PilO Machinery gene
  FOG18_RS10130 (FOG18_10130) pilN 2269942..2270514 (-) 573 WP_058501753.1 PilN domain-containing protein Machinery gene
  FOG18_RS10135 (FOG18_10135) pilM 2270518..2271582 (-) 1065 WP_143868434.1 type IV pilus assembly protein PilM Machinery gene
  FOG18_RS10140 (FOG18_10140) - 2271839..2272843 (+) 1005 WP_143868436.1 hypothetical protein -

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 79167.14 Da        Isoelectric Point: 9.7517

>NTDB_id=372943 FOG18_RS10115 WP_143868428.1 2266657..2268798(-) (pilQ) [Legionella israelensis strain L18-01051]
MRKIFAMLIVFLAGSGMVFSKSNDLIAVKARPLPDNRVRLDFHFSRPLSQLPASFVTEKPSRLVLDFLNAGTHMDEPSRS
KHIGIGSLKKYNIVSVGNRVRAVLDLSDFVSYSGNLVGNTYCLTLRGKGGLLFERSREIFVTNKPVNTRHTITHIGFRGA
DKKGGRVVIDLTDASVPIDVTKEGNEVIIDFHNTQIPQRLARRYDVTDFHSPAQILTARQYGKKTRVTVENKGYYDYYAY
QVNKQFIVDVFPLTEEEINQAKLKKKVFTGKKISLNFQNIPVRSVLQLLADFTGINMVVSDEVKGDITLRLNEVPWDQAL
DIILTTQGLDKRQRGNVMLIDTKARLEQREKAELESQKELQVLAPLRSELIQIKYAKAAEIATLLKDKETSLLTERGKVS
VDERTNTILIQETAVQIERIRELIAQLDVPVKQVLIEARIVNVTKDCTQDLGIRFGISRPTHLSGTLDGANQLAQGIDPA
DVTPLNRRLNVDLAALPVDANPASIGIALAKLGDNILLDLELSALESEGRAEIVASPRLMTTNQKSAIIESGEDIPYQEA
TSSGATAVAFKKAVLSLKVTPQITPDNKLVMELEINQDSDSGRRVQGVPIILTRSIETNVLVNNGQTIVLGGIYRRDKNN
SITRVPFLGELPVVGNLFRSRSTSVSNEELLIFITPKIITNALSITSIEGQQHVAHSRVELDKFGKPVRTYVK

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=372943 FOG18_RS10115 WP_143868428.1 2266657..2268798(-) (pilQ) [Legionella israelensis strain L18-01051]
GTGCGTAAAATTTTCGCAATGTTGATTGTTTTTTTAGCCGGTTCAGGGATGGTGTTTTCTAAATCCAATGATCTTATTGC
CGTCAAGGCCAGACCTTTACCTGATAATCGTGTGCGTCTTGATTTTCATTTCTCTCGCCCATTAAGCCAGCTTCCGGCAA
GCTTTGTGACTGAGAAACCTTCCAGGTTAGTGCTTGACTTTCTGAACGCAGGTACCCATATGGATGAGCCATCCAGAAGC
AAACACATCGGTATAGGCTCTTTGAAAAAATATAATATTGTTTCGGTTGGAAATCGTGTAAGAGCGGTTTTAGACTTATC
GGATTTTGTATCTTATTCTGGAAACCTGGTTGGTAATACTTATTGCCTGACATTACGGGGTAAAGGTGGACTGTTATTTG
AAAGAAGTAGAGAAATTTTCGTGACCAATAAGCCGGTTAATACACGCCATACTATTACTCATATCGGTTTTCGTGGCGCA
GATAAAAAGGGCGGCAGAGTTGTGATCGATCTGACAGATGCCAGTGTGCCCATTGACGTAACGAAAGAAGGCAATGAAGT
GATCATTGATTTTCATAATACCCAAATCCCTCAACGATTGGCAAGGCGTTACGATGTCACCGATTTTCACAGTCCAGCAC
AAATACTGACAGCAAGGCAATATGGTAAAAAAACACGAGTAACCGTAGAAAATAAAGGATATTATGACTATTATGCCTAC
CAGGTTAACAAACAGTTTATTGTAGATGTTTTTCCATTGACGGAGGAAGAGATAAATCAGGCCAAATTAAAGAAAAAGGT
GTTTACAGGCAAGAAAATTTCCTTGAATTTTCAGAACATTCCAGTTCGTTCCGTTCTTCAGTTGCTGGCTGATTTTACCG
GCATTAACATGGTGGTTAGCGATGAAGTTAAGGGTGATATTACGTTAAGATTGAATGAAGTACCCTGGGATCAGGCACTC
GATATTATTTTGACGACACAGGGGCTGGATAAACGTCAAAGAGGCAATGTAATGCTGATTGACACCAAAGCCAGGCTTGA
GCAAAGAGAAAAGGCGGAGTTGGAGAGTCAGAAAGAATTGCAGGTATTAGCCCCGCTTCGTTCAGAACTGATTCAAATTA
AGTATGCAAAAGCGGCCGAGATTGCCACTTTATTAAAGGATAAAGAGACTTCTTTGCTTACTGAAAGAGGTAAGGTAAGT
GTTGACGAGCGAACCAATACGATTTTAATTCAGGAGACGGCTGTTCAGATTGAACGTATTCGCGAGCTAATTGCTCAGCT
GGATGTCCCCGTTAAGCAGGTTTTGATTGAAGCTCGGATTGTTAATGTCACTAAAGACTGTACCCAGGATTTGGGCATTC
GCTTTGGCATATCCAGGCCGACCCATTTAAGCGGTACACTGGATGGCGCTAACCAGCTAGCTCAGGGCATCGATCCTGCT
GATGTAACGCCACTTAATCGTCGTTTGAATGTTGATCTGGCCGCCTTGCCAGTCGATGCTAATCCGGCATCCATTGGTAT
CGCGCTTGCTAAATTAGGTGATAATATTTTACTTGATCTGGAATTGTCAGCCCTGGAAAGTGAGGGACGGGCTGAAATTG
TTGCCAGTCCTCGATTAATGACGACTAACCAGAAGTCGGCTATTATTGAATCAGGGGAAGATATTCCCTATCAGGAAGCA
ACTTCCAGTGGTGCTACAGCAGTCGCATTTAAGAAAGCTGTGTTAAGCTTAAAAGTGACGCCACAAATTACTCCGGATAA
TAAACTGGTGATGGAACTTGAAATAAACCAGGATTCAGATTCCGGGCGGCGGGTTCAGGGTGTACCTATTATTTTGACTC
GTTCAATCGAAACGAATGTGTTGGTTAATAACGGACAGACCATTGTTCTTGGCGGTATTTATAGGAGAGACAAGAATAAC
TCGATTACACGCGTTCCGTTCTTGGGCGAATTGCCTGTAGTGGGTAATTTATTCAGGAGCCGATCAACTTCTGTGTCTAA
TGAGGAGTTGCTCATTTTCATTACTCCTAAGATAATTACCAACGCTCTGTCAATTACCAGTATTGAAGGGCAGCAACATG
TGGCTCACAGCCGCGTAGAACTGGATAAATTTGGAAAGCCGGTGAGAACCTATGTAAAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(369-433)

Bacterial type II and III secretion system protein (Secretin)

(524-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

67.532

97.195

0.656
  pilQ Legionella pneumophila strain ERS1305867

67.388

97.195

0.655
  pilQ Acinetobacter baumannii D1279779

37.717

97.055

0.366
  pilQ Acinetobacter baumannii strain A118

37.717

97.055

0.366
  pilQ Pseudomonas aeruginosa PAK

37.901

96.213

0.365

Multiple sequence alignment