Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   G5T40_RS20055 Genome accession   NZ_CP049196
Coordinates   4170300..4170776 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain E118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4165300..4175776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5T40_RS20025 - 4165800..4166684 (+) 885 WP_001116795.1 YfjP family GTPase -
  G5T40_RS20030 - 4166887..4167567 (+) 681 WP_001282921.1 WYL domain-containing protein -
  G5T40_RS20035 - 4167715..4168392 (+) 678 WP_001097302.1 hypothetical protein -
  G5T40_RS20040 - 4168398..4168631 (+) 234 WP_001278293.1 DUF905 family protein -
  G5T40_RS20045 - 4168721..4169539 (+) 819 WP_001175165.1 DUF932 domain-containing protein -
  G5T40_RS20050 - 4169805..4170284 (+) 480 WP_000706978.1 antirestriction protein -
  G5T40_RS20055 radC 4170300..4170776 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  G5T40_RS20060 - 4170839..4171060 (+) 222 WP_023356553.1 DUF987 domain-containing protein -
  G5T40_RS20065 - 4171223..4171591 (+) 369 WP_032180374.1 type IV toxin-antitoxin system YeeU family antitoxin -
  G5T40_RS20070 - 4171681..4172058 (+) 378 WP_023356554.1 TA system toxin CbtA family protein -
  G5T40_RS20075 - 4172055..4172204 (+) 150 Protein_3981 DUF5983 family protein -
  G5T40_RS20080 - 4172283..4172477 (+) 195 WP_024181941.1 DUF957 domain-containing protein -
  G5T40_RS20085 - 4172562..4173404 (+) 843 WP_022645115.1 DUF4942 domain-containing protein -
  G5T40_RS20090 cadC 4174153..4175691 (+) 1539 WP_001187196.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=372943 G5T40_RS20055 WP_001186774.1 4170300..4170776(+) (radC) [Escherichia coli strain E118]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=372943 G5T40_RS20055 WP_001186774.1 4170300..4170776(+) (radC) [Escherichia coli strain E118]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment