Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   C8250_RS06205 Genome accession   NZ_CP048835
Coordinates   1313837..1314472 (+) Length   211 a.a.
NCBI ID   WP_138354511.1    Uniprot ID   -
Organism   Streptomyces sp. So13.3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1308837..1319472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS06180 (C8250_006205) - 1309379..1311100 (-) 1722 WP_138354515.1 urease subunit alpha -
  C8250_RS06185 (C8250_006210) - 1311093..1311404 (-) 312 WP_138354514.1 urease subunit beta -
  C8250_RS06190 (C8250_006215) - 1311420..1311722 (-) 303 WP_138354513.1 urease subunit gamma -
  C8250_RS06195 (C8250_006220) - 1312077..1313408 (+) 1332 WP_244808992.1 M28 family metallopeptidase -
  C8250_RS06200 (C8250_006225) - 1313481..1313780 (-) 300 WP_138354512.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  C8250_RS06205 (C8250_006230) clpP 1313837..1314472 (+) 636 WP_138354511.1 ATP-dependent Clp protease proteolytic subunit Regulator
  C8250_RS06210 (C8250_006235) - 1314478..1314783 (+) 306 WP_138354562.1 hypothetical protein -
  C8250_RS06215 (C8250_006240) - 1315272..1315742 (+) 471 WP_244808993.1 NlpC/P60 family protein -
  C8250_RS06220 (C8250_006245) - 1315892..1316320 (+) 429 WP_138354509.1 VOC family protein -
  C8250_RS06225 (C8250_006250) - 1316317..1316949 (+) 633 WP_138354508.1 GNAT family N-acetyltransferase -
  C8250_RS06230 (C8250_006255) - 1317036..1317464 (-) 429 WP_138354507.1 ATP-binding protein -
  C8250_RS06235 (C8250_006260) - 1317707..1318594 (+) 888 WP_138354506.1 helix-turn-helix transcriptional regulator -
  C8250_RS06240 (C8250_006265) - 1318606..1318842 (+) 237 WP_138354505.1 DUF397 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22906.11 Da        Isoelectric Point: 5.6656

>NTDB_id=370877 C8250_RS06205 WP_138354511.1 1313837..1314472(+) (clpP) [Streptomyces sp. So13.3]
MIRPTARYVLPEFTERTSSGTRTMDPYSKLLQERVVILGTQIDDTSANDVMAQFIHLESSAPGQDISLYINSPGGSFTAM
TAIYDTMQFVTCDVSTVCIGQAASAAAVLLAAGAPGKRMITPGARVLIHQPSFGQAVQGTIADLEIQARELLRTREKLEE
LLVRHTGQEPERVSADIERDMILDATQALAYGIVDRVTLSRKTNGTAHGIR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=370877 C8250_RS06205 WP_138354511.1 1313837..1314472(+) (clpP) [Streptomyces sp. So13.3]
ATGATCCGACCCACCGCCCGCTACGTCCTGCCCGAGTTCACCGAACGCACCAGCTCCGGGACCCGCACCATGGACCCGTA
CTCCAAGCTGCTGCAGGAACGCGTCGTCATCCTCGGGACCCAGATCGACGACACCTCCGCCAACGACGTCATGGCGCAGT
TCATCCATCTGGAGAGCTCGGCACCCGGGCAGGACATCTCGCTGTACATCAACTCCCCCGGCGGCTCGTTCACCGCCATG
ACCGCGATCTACGACACGATGCAGTTCGTCACCTGCGACGTGTCCACGGTCTGCATCGGCCAGGCGGCCTCGGCCGCCGC
CGTGCTGCTCGCCGCCGGCGCCCCCGGCAAGCGCATGATCACTCCGGGCGCACGGGTCCTCATCCACCAGCCGTCGTTCG
GGCAGGCAGTGCAGGGCACCATCGCGGACCTGGAGATCCAGGCCCGGGAACTGCTGCGCACCCGGGAGAAGTTGGAGGAG
CTGCTGGTGCGCCACACCGGACAGGAGCCCGAGCGGGTCAGCGCCGACATCGAGCGCGACATGATCCTCGACGCCACGCA
GGCGCTGGCCTACGGCATCGTCGACCGCGTCACCCTCAGCCGGAAGACCAACGGCACCGCACACGGCATCCGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.619

89.573

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.213

89.1

0.403
  clpP Streptococcus pneumoniae Rx1

41.327

92.891

0.384
  clpP Streptococcus pneumoniae D39

41.327

92.891

0.384
  clpP Streptococcus pneumoniae R6

41.327

92.891

0.384
  clpP Streptococcus pneumoniae TIGR4

41.327

92.891

0.384
  clpP Streptococcus mutans UA159

41.799

89.573

0.374
  clpP Lactococcus lactis subsp. cremoris KW2

41.361

90.521

0.374
  clpP Streptococcus thermophilus LMG 18311

39.691

91.943

0.365
  clpP Streptococcus thermophilus LMD-9

39.691

91.943

0.365
  clpP Streptococcus pyogenes JRS4

40.212

89.573

0.36
  clpP Streptococcus pyogenes MGAS315

40.212

89.573

0.36