Detailed information NTG0369446

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: FY136_RS14610
• Genome accession: NZ_CP048551
• Coordinates: 2968539..2970071 (+)
• Length: 510 a.a.
• NCBI ID: WP_262516416.1
• Uniprot ID: -
• Organism: Agrobacterium tumefaciens strain Kin002
• Function: promote branch migration (predicted from homology) Homologous recombination

Genomic Context

Location: 2963539..2975071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY136_RS14585 (FY136_14500)	-	2963596..2964564 (+)	969	WP_174028772.1	ABC transporter permease subunit	-
FY136_RS14590 (FY136_14505)	ugpE	2964576..2965418 (+)	843	WP_065114681.1	sn-glycerol-3-phosphate ABC transporter permease UgpE	-
FY136_RS14595 (FY136_14510)	-	2965429..2966529 (+)	1101	WP_262516415.1	sn-glycerol-3-phosphate import ATP-binding protein UgpC	-
FY136_RS14600 (FY136_14515)	-	2966640..2967152 (+)	513	WP_065114683.1	cupin domain-containing protein	-
FY136_RS14605 (FY136_14520)	gshB	2967398..2968357 (+)	960	WP_206912448.1	glutathione synthase	-
FY136_RS14610 (FY136_14525)	comM	2968539..2970071 (+)	1533	WP_262516416.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
FY136_RS14615 (FY136_14530)	cysK	2970293..2971261 (-)	969	WP_065114685.1	cysteine synthase A	-
FY136_RS14620 (FY136_14535)	-	2971417..2972034 (-)	618	WP_262516417.1	LysE family translocator	-
FY136_RS14625 (FY136_14540)	dut	2972180..2972650 (-)	471	WP_065114686.1	dUTP diphosphatase	-
FY136_RS14630 (FY136_14545)	-	2972741..2974324 (+)	1584	WP_065114687.1	peptide chain release factor 3	-

Sequence

Protein

• Length: 510 a.a.
• Molecular weight: 53308.76 Da
• Isoelectric Point: 8.7927

>NTDB_id=369446 FY136_RS14610 WP_262516416.1 2968539..2970071(+) (comM) [Agrobacterium tumefaciens strain Kin002]
MVARVNTVAFQGMEGVPVEVQVMVAPGKVGIQIVGLPDKAVAESRERVQAALHASGLALPAKKVTVNLAPADLPKEGSHF
DLPIALGLMAALGAIPAEALGQYVVLGELNLDGTIGMVSGVLPAAMGANALGKGLICPAESGPEAAWAGAGIDILAPRSL
IALANHFRGTQLLSRPTPAIRANPVNLPDLADIKGQESARRALEVAAAGGHNLLMVGPPGSGKSMLAARLPSILPPLEAA
ELLEVSMVHSIAGQLSGGKLSDRRPFRTPHHSATMAALIGGGLRAKPGEASLAHHGVLFLDEFPEFSPQVLDALRQPLET
GECIIARANHRVSYPAEIQLVAAMNPCRCGMAGEPGLTCARGPRCVTDYQARISGPLLDRIDIRIDVPAVSATDLIRPVA
SEPSAAVAARVARARLAQQERYASAGFPAIRTNARCTTTLIEKYAEPDASGLQLLRDAAERLKFSARGYHRILKVARTLA
DLDGKQTVGRIHVAEAVSYRIAGERLRTAA

Nucleotide

• Length: 1533 bp

>NTDB_id=369446 FY136_RS14610 WP_262516416.1 2968539..2970071(+) (comM) [Agrobacterium tumefaciens strain Kin002]
ATGGTGGCACGGGTCAATACGGTTGCATTTCAGGGCATGGAGGGTGTGCCCGTCGAGGTGCAGGTCATGGTCGCGCCCGG
AAAGGTCGGCATCCAGATTGTCGGCCTGCCGGACAAGGCGGTGGCTGAAAGCCGGGAGCGGGTGCAGGCCGCCCTGCACG
CCTCGGGACTGGCCTTGCCGGCGAAAAAAGTCACCGTCAATCTCGCACCCGCCGATCTGCCAAAGGAAGGATCGCATTTC
GATCTTCCCATTGCTCTGGGCCTCATGGCCGCTTTGGGCGCCATACCGGCGGAAGCGCTTGGCCAATATGTGGTTCTCGG
CGAACTCAATCTCGATGGCACCATCGGCATGGTTTCAGGCGTTCTGCCGGCCGCCATGGGTGCCAATGCTCTCGGCAAGG
GACTGATCTGTCCGGCTGAAAGCGGGCCGGAGGCGGCCTGGGCCGGTGCCGGTATCGATATTCTCGCCCCGCGCAGCCTC
ATAGCGCTTGCCAATCATTTTCGCGGCACCCAGCTCCTGTCGCGCCCGACACCCGCCATCCGCGCCAATCCGGTCAATTT
GCCGGATCTGGCGGATATCAAAGGACAGGAGAGCGCCCGCCGCGCGCTGGAGGTGGCGGCGGCCGGCGGTCACAATCTGC
TGATGGTCGGTCCGCCCGGTTCCGGCAAATCCATGCTCGCCGCCCGTCTGCCCTCCATCCTGCCGCCACTTGAGGCGGCG
GAACTGCTGGAAGTGTCGATGGTTCATTCCATCGCCGGCCAATTATCGGGTGGCAAGCTTTCGGACCGCAGGCCGTTTCG
CACACCGCACCATTCCGCCACCATGGCGGCACTGATCGGCGGTGGGTTGCGCGCCAAGCCGGGCGAGGCCTCGCTTGCCC
ATCACGGTGTTCTTTTTCTCGATGAATTCCCGGAATTTTCACCGCAGGTGCTGGATGCGCTGCGTCAGCCGCTGGAAACC
GGAGAATGCATCATCGCACGCGCCAATCACCGCGTCAGCTATCCGGCAGAAATCCAGCTCGTGGCAGCCATGAACCCCTG
CCGCTGCGGCATGGCCGGAGAGCCGGGTCTCACCTGCGCCAGAGGACCGCGCTGTGTGACCGACTATCAGGCCCGTATTT
CCGGTCCGCTGCTGGATCGTATCGATATCCGCATCGACGTTCCCGCCGTTTCCGCTACCGATCTTATCCGCCCCGTTGCA
TCTGAGCCGAGTGCGGCGGTCGCGGCCCGTGTGGCCCGGGCGCGCCTTGCCCAGCAGGAGCGTTATGCGTCGGCGGGATT
TCCTGCCATCCGCACCAATGCCCGCTGTACAACGACTTTGATCGAAAAATACGCCGAACCGGATGCATCCGGACTGCAAT
TGCTGCGCGATGCCGCCGAACGGCTGAAATTTTCCGCACGCGGTTATCACCGTATTCTCAAGGTCGCGCGCACATTGGCC
GATCTGGATGGAAAACAGACGGTCGGCCGCATCCACGTAGCGGAAGCTGTCTCGTACCGTATCGCGGGTGAGAGGCTGCG
GACAGCGGCTTAG

Domains

Predicted by InterProScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (189-394)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-500)

• Subunit ChlI of Mg-chelatase (ChlI) (20-140)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	45.8	98.039	0.449
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.99	99.804	0.449
comM	Vibrio cholerae O1 biovar El Tor strain E7946	44.622	98.431	0.439
comM	Vibrio cholerae strain A1552	44.622	98.431	0.439
comM	Vibrio campbellii strain DS40M4	43.713	98.235	0.429
comM	Haemophilus influenzae Rd KW20	43.168	99.02	0.427
comM	Glaesserella parasuis strain SC1401	42.744	98.627	0.422
comM	Legionella pneumophila str. Paris	41.153	98.627	0.406
comM	Legionella pneumophila strain ERS1305867	41.153	98.627	0.406