Detailed information NTG0036770

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: NHAL_RS18385
• Genome accession: NC_013960
• Coordinates: 3905541..3906683 (-)
• Length: 380 a.a.
• NCBI ID: WP_013034655.1
• Uniprot ID: -
• Organism: Nitrosococcus halophilus Nc 4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3900541..3911683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHAL_RS18365 (Nhal_3787)	-	3901929..3902807 (+)	879	WP_013034651.1	DMT family transporter	-
NHAL_RS18370 (Nhal_3788)	-	3903037..3903420 (-)	384	WP_013034652.1	hypothetical protein	-
NHAL_RS18375 (Nhal_3789)	-	3903562..3904254 (-)	693	WP_013034653.1	hypothetical protein	-
NHAL_RS18380 (Nhal_3790)	-	3904694..3905506 (+)	813	WP_013034654.1	SDR family NAD(P)-dependent oxidoreductase	-
NHAL_RS18385 (Nhal_3791)	pilU	3905541..3906683 (-)	1143	WP_013034655.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
NHAL_RS18390 (Nhal_3792)	pilT	3906692..3907729 (-)	1038	WP_013034656.1	type IV pilus twitching motility protein PilT	Machinery gene
NHAL_RS18395 (Nhal_3793)	-	3907850..3908545 (+)	696	WP_013034657.1	YggS family pyridoxal phosphate-dependent enzyme	-
NHAL_RS18400 (Nhal_3794)	proC	3908640..3909473 (+)	834	WP_013034658.1	pyrroline-5-carboxylate reductase	-
NHAL_RS18405 (Nhal_3795)	-	3909466..3910029 (+)	564	WP_013034659.1	YggT family protein	-
NHAL_RS18410 (Nhal_3796)	-	3910036..3910344 (+)	309	WP_013034660.1	DUF167 domain-containing protein	-
NHAL_RS18415 (Nhal_3797)	-	3910387..3911610 (-)	1224	WP_013034661.1	AmpG family muropeptide MFS transporter	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 42298.35 Da
• Isoelectric Point: 6.5079

>NTDB_id=36770 NHAL_RS18385 WP_013034655.1 3905541..3906683(-) (pilU) [Nitrosococcus halophilus Nc 4]
MKDLAVDLEILLQAMVKHDASDLFITAGFPPSFKIHGKVTPTSQRSLSESQAKELVFKAMTPQQQEEFNQTHEGNFALSR
ENLGRFRVNAFYQRSSAGMVLRRIKTEIPSFEQLHLPTTLRQLTMISRGMVIFVGGTGSGKSTSLAAMVGYRNRNSKGHI
VTIEDPIEYIHEHEDCIITQREVGIDTQSYEVALKNTLRQAPDVILIGEIRSRETMEYAMAFAETGHLCLSTLHANNANQ
ALERIINFFPEDRRQQLLLDLSLNLKAVVAQRLIPTTDGQGRRAAVEILINTPLVAELIYKGDVIGIKDLMKRSTEQGMQ
SFDRAVYQLHKEGAISYEDALRNADSANEVRLMVKLGGEGMAEKLSAAIEGVTLQGPEQG

Nucleotide

• Length: 1143 bp

>NTDB_id=36770 NHAL_RS18385 WP_013034655.1 3905541..3906683(-) (pilU) [Nitrosococcus halophilus Nc 4]
ATGAAAGATCTAGCAGTTGACCTAGAGATTCTGCTGCAGGCCATGGTCAAGCATGATGCCTCAGATCTCTTTATTACGGC
AGGATTTCCTCCTAGTTTCAAGATCCACGGTAAAGTTACACCGACAAGCCAGCGGTCTTTGTCAGAGAGCCAAGCAAAAG
AGTTAGTGTTCAAGGCGATGACTCCCCAGCAGCAGGAGGAGTTTAACCAAACCCATGAGGGAAATTTTGCCCTTAGCAGA
GAAAATCTCGGCCGGTTCCGTGTTAATGCCTTCTATCAGCGGAGTAGTGCAGGCATGGTGCTACGCCGCATCAAGACGGA
GATCCCCAGCTTTGAGCAACTTCATTTGCCCACCACACTACGTCAGCTCACTATGATTAGCCGTGGCATGGTGATCTTCG
TAGGGGGAACAGGATCAGGTAAATCCACTTCCCTTGCTGCCATGGTAGGTTACCGTAATCGCAACAGCAAGGGCCATATT
GTAACTATTGAAGATCCCATCGAATATATTCATGAGCATGAAGACTGTATCATCACCCAGCGGGAAGTGGGTATCGATAC
CCAGTCTTACGAGGTGGCCCTTAAGAATACCCTACGGCAGGCCCCAGATGTGATCCTGATTGGCGAGATTCGGAGTCGGG
AAACCATGGAATATGCGATGGCCTTTGCCGAGACCGGTCATCTGTGTTTATCCACGCTCCATGCCAATAATGCCAATCAA
GCCTTAGAGCGCATTATCAATTTCTTTCCTGAAGATCGACGCCAGCAATTGTTGTTGGATCTTTCTCTGAACCTTAAGGC
GGTGGTCGCCCAGCGCCTGATTCCGACCACGGATGGTCAGGGGCGGCGGGCAGCAGTAGAAATCCTCATTAATACGCCAC
TGGTTGCTGAGCTTATTTATAAGGGAGATGTCATCGGCATCAAGGACTTGATGAAACGCTCGACCGAACAAGGGATGCAA
AGTTTTGATAGGGCCGTTTATCAATTGCATAAAGAAGGGGCCATTAGTTACGAAGATGCACTCCGCAATGCTGATTCGGC
CAATGAAGTGCGCCTAATGGTAAAACTAGGGGGTGAGGGAATGGCCGAGAAACTAAGTGCCGCCATCGAAGGAGTCACTC
TCCAAGGGCCGGAGCAGGGTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (10-275)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	63.514	97.368	0.618
pilU	Acinetobacter baylyi ADP1	62.64	93.684	0.587
pilU	Vibrio cholerae strain A1552	56.857	92.105	0.524
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.331	95.263	0.384